BtaEX6072311 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000020505 | SBNO1
Description
strawberry notch homolog 1 (Drosophila) [Source:HGNC Symbol;Acc:HGNC:22973]
Coordinates
chr17:54534539-54536646:+
Coord C1 exon
chr17:54534539-54534676
Coord A exon
chr17:54535343-54535419
Coord C2 exon
chr17:54536453-54536646
Length
77 bp
Sequences
Splice sites
3' ss Seq
TTTTCATCTTCTTTTCACAGGTA
3' ss Score
11.73
5' ss Seq
TTGGTTAGT
5' ss Score
4.82
Exon sequences
Seq C1 exon
ATAAGAAACAACAAGAAAACTGCCATCTTAGTTAAAGAAGTAAACCCTAAAAAGAAGCTTTTCTTAGTTTATAGACCAAATACCGGGAAACAACTCAAATTAGAAATTTATGCTGATCTAAAAAAGAAATATAAGAAG
Seq A exon
GTAGTCTCAGACGATGCCGTGGTCCACTGGTTAGATCAGTATAATTCATCTGCAGATACTTGTACTCATGCTTATTG
Seq C2 exon
GCGTGGCAACTGCAAAAAAGCAAGCTTGGGATTAGTTTGTGAAATAGGTCTTCGTTGTCGCACATACTATGTATTATGTGGCTCAGTACTGAGTGTCTGGACAAAAGTTGAGGGTGTTCTTGCGTCTGTCAGTGGCACAAATGTGAAAATGCAGATAGTTCGCCTAAGAACAGAGGATGGACAGCGGATTGTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000020505-'31-40,'31-39,32-40=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCAAATACCGGGAAACAACTCA
R:
ACCCTCAACTTTTGTCCAGACAC
Band lengths:
179-256
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]