MmuEX6020980 @ mm10
Exon Skipping
Gene
ENSMUSG00000038095 | Sbno1
Description
strawberry notch homolog 1 (Drosophila) [Source:MGI Symbol;Acc:MGI:2384298]
Coordinates
chr5:124376098-124379422:-
Coord C1 exon
chr5:124379285-124379422
Coord A exon
chr5:124378470-124378546
Coord C2 exon
chr5:124376098-124376291
Length
77 bp
Sequences
Splice sites
3' ss Seq
GTTTTCCTTTGTCTTTGCAGGTA
3' ss Score
12.81
5' ss Seq
CTGGTTAGT
5' ss Score
6.32
Exon sequences
Seq C1 exon
ATAAGAAACAACAAAAAAACTGCAATCTTAGTTAAAGAAGTAAACCCTAAGAAGAAACTATTTTTAATTTACCGACCAAACACTGGGAAGCAACTCAAATTAGAAATTTATGCTGACCTGAAAAAGAAATATAAGAAG
Seq A exon
GTAGTTTCTGATGACGCCCTGGTACACTGGCTGGATCAGTATAACTCCTCTGCAGACACCTGTACTCACGCATACTG
Seq C2 exon
GCGTGGCAATTGCAAAAAAGCAAGTTTAGGATTGGTATGTGAGATTGGTCTCCGCTGCCGCACGTACTATGTACTGTGTGGCTCAGTACTGAGCGTCTGGACAAAAGTGGAAGGTGTTCTGGCCTCTGTCAGCGGCACAAATGTGAAAATGCAGATAGTGCGGCTAAGGACCGAAGATGGGCAGCGGATTGTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000038095-'59-76,'59-74,60-76=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCAAACACTGGGAAGCAACTCA
R:
CCACTTTTGTCCAGACGCTCA
Band lengths:
173-250
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types