HsaEX6069869 @ hg38
Exon Skipping
Gene
ENSG00000139697 | SBNO1
Description
strawberry notch homolog 1 [Source:HGNC Symbol;Acc:HGNC:22973]
Coordinates
chr12:123297978-123304719:-
Coord C1 exon
chr12:123304582-123304719
Coord A exon
chr12:123302824-123302900
Coord C2 exon
chr12:123297978-123298171
Length
77 bp
Sequences
Splice sites
3' ss Seq
AATTCTTCTCATTTTTACAGGTC
3' ss Score
10.9
5' ss Seq
TTGGTTAGT
5' ss Score
4.82
Exon sequences
Seq C1 exon
ATAAGGAACAACAAGAAAACTGCCATCTTAGTTAAAGAAGTGAATCCTAAAAAGAAACTTTTCTTAGTTTATCGACCAAATACTGGGAAGCAGCTCAAATTAGAAATTTATGCTGATCTAAAAAAGAAATATAAGAAG
Seq A exon
GTCGTCTCAGATGATGCCCTGATGCACTGGTTAGATCAGTATAATTCATCTGCAGATACTTGTACTCATGCTTATTG
Seq C2 exon
GCGCGGCAATTGCAAAAAAGCAAGCTTGGGGCTAGTTTGTGAAATAGGTCTTCGTTGCCGTACATATTATGTATTATGTGGTTCAGTGCTGAGTGTCTGGACAAAAGTTGAGGGTGTTCTAGCATCTGTCAGTGGCACAAACGTGAAGATGCAGATCGTGCGGCTAAGAACGGAAGATGGGCAACGGATTGTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000139697_MULTIEX2-4/4=3-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCAAATACTGGGAAGCAGCTCA
R:
TTGTCCAGACACTCAGCACTG
Band lengths:
167-244
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains