GgaEX1050940 @ galGal3
Exon Skipping
Gene
ENSGALG00000003392 | SBNO1_CHICK
Description
NA
Coordinates
chr15:5073818-5074975:+
Coord C1 exon
chr15:5073818-5073894
Coord A exon
chr15:5074576-5074652
Coord C2 exon
chr15:5074782-5074975
Length
77 bp
Sequences
Splice sites
3' ss Seq
ATTCTGAATTACTTTACCAGGTA
3' ss Score
6.32
5' ss Seq
CTGGTTAGT
5' ss Score
6.32
Exon sequences
Seq C1 exon
TTTTGGTATACAGACCAAATACTGGGAAACAACTCAAACTAGAAACATGCGCAGACCTGAAAAAGAAATATAAGAAG
Seq A exon
GTACCTTCTGAAGATGCTCTGCCACACTGGTTAGAGCAGTACAACTCTTCTGCAGACACCTGCACACATGCTTACTG
Seq C2 exon
GAGAGGCAATTGTAAGAAGGCAGGCTTGGGATTAGTTTGTGAAGTGGGACTCCGCTGTCGAACTTACTATGTCTTGTGTGGTTCAGTATTGAGCGTCTGGACAAAAGTGGAAGGCGTTCTAGCCTCTGTGAGTGGTACCAATGTGAAAATGCAAATAGTTCGTCTAAGAACTGAAGACGGGCAGAGGATCGTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003392-'35-37,'35-36,36-37=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
3' UTR
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=NA
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGAAACATGCGCAGACCTGAA
R:
TTGGTACCACTCACAGAGGCT
Band lengths:
178-255
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]