DreEX0007719 @ danRer10
Exon Skipping
Gene
ENSDARG00000099080 | SBNO1
Description
strawberry notch homolog 1 (Drosophila) [Source:HGNC Symbol;Acc:HGNC:22973]
Coordinates
chr10:44518012-44519013:-
Coord C1 exon
chr10:44518876-44519013
Coord A exon
chr10:44518376-44518452
Coord C2 exon
chr10:44518012-44518205
Length
77 bp
Sequences
Splice sites
3' ss Seq
TCTGTCTCTGATGTGGACAGGTT
3' ss Score
7.87
5' ss Seq
CTGGTACTG
5' ss Score
4.41
Exon sequences
Seq C1 exon
GTGCGCAATAATAAGAAGATCGCCATCCTGGTGAAGGAGGTAAACCCGCGGAAGAGGCTCTTCATGGTCTACAGACCCAACATCGGGAAACAGGTCAAGCTGGAGACCTACACCGACATCAAGAAGAGGAGCAAGAAG
Seq A exon
GTTCTGTCTGATGATGCCAAACAGCACTGGATGGATCAGTACAGCTGCTCTGCTGACGTCTGCTCACACGCTTACTG
Seq C2 exon
GCGAGGGAACTGTAAGAAGGCGTCAGTGGGTCTGCAGTGTGAGATCGGCCTGCGCTGCAGAACGTATTTCGTGCTCTGCGGCTCCGTGCTCAGCGTCTGGACCAAAGTGGAGGGAGTTCTGGCGTCCGTCAGCGGAGCCAACGTCAAGATGCAGATCGTGCGCTTGAGGACGGAGGACGGTCAGAGGATTGTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000099080_CASSETTE2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
NA
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGAAACAGGTCAAGCTGGAG
R:
AACTCCCTCCACTTTGGTCCA
Band lengths:
172-249
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]