RnoEX0078203 @ rn6
Exon Skipping
Gene
ENSRNOG00000001064 | Sbno1
Description
strawberry notch homolog 1 [Source:RGD Symbol;Acc:1310005]
Coordinates
chr12:37643792-37646666:+
Coord C1 exon
chr12:37643792-37643929
Coord A exon
chr12:37644476-37644552
Coord C2 exon
chr12:37646473-37646666
Length
77 bp
Sequences
Splice sites
3' ss Seq
GTTCTCCCTTGTCTTTGCAGGTC
3' ss Score
12.92
5' ss Seq
CTGGTTGGT
5' ss Score
4.67
Exon sequences
Seq C1 exon
ATAAGAAACAACAAAAAAACTGCAATCTTAGTTAAAGAAGTAAACCCCAAGAAGAAACTATTCTTAATTTATCGACCAAACACTGGGAAGCAACTGAAACTAGAAATTTATGCTGATCTGAAAAAGAAATATAAGAAG
Seq A exon
GTCGTCTCTGACGATGCCCTGGTACACTGGCTGGATCAGTACAACTCCTCTGCAGACACCTGTACTCACGCATACTG
Seq C2 exon
GCGTGGCAATTGCAAAAAAGCAAGCTTAGGATTGGTTTGTGAGATTGGTCTCCGCTGCCGCACTTACTATGTACTGTGTGGCTCAGTACTGAGCGTCTGGACAAAGGTGGAGGGTGTTCTGGCCTCTGTCAGCGGCACAAATGTGAAAATGCAGATAGTGCGGCTCAGGACCGAAGACGGGCAGCGGATTGTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000001064_MULTIEX2-4/4=3-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCAAACACTGGGAAGCAACTG
R:
GAACACCCTCCACCTTTGTCC
Band lengths:
182-259
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]