GgaEX1050940 @ galGal4
Exon Skipping
Gene
ENSGALG00000003392 | SBNO1
Description
protein strawberry notch homolog 1 [Source:RefSeq peptide;Acc:NP_001026640]
Coordinates
chr15:5023328-5024546:+
Coord C1 exon
chr15:5023328-5023465
Coord A exon
chr15:5024147-5024223
Coord C2 exon
chr15:5024353-5024546
Length
77 bp
Sequences
Splice sites
3' ss Seq
ATTCTGAATTACTTTACCAGGTA
3' ss Score
6.32
5' ss Seq
CTGGTTAGT
5' ss Score
6.32
Exon sequences
Seq C1 exon
ATAAGAAATAACAAGAAAACAGCTATTCTAGTGAAAGAAGTGAATCCTAAAAAGAAGCTTTTTTTGGTATACAGACCAAATACTGGGAAACAACTCAAACTAGAAACATGCGCAGACCTGAAAAAGAAATATAAGAAG
Seq A exon
GTACCTTCTGAAGATGCTCTGCCACACTGGTTAGAGCAGTACAACTCTTCTGCAGACACCTGCACACATGCTTACTG
Seq C2 exon
GAGAGGCAATTGTAAGAAGGCAGGCTTGGGATTAGTTTGTGAAGTGGGACTCCGCTGTCGAACTTACTATGTCTTGTGTGGTTCAGTATTGAGCGTCTGGACAAAAGTGGAAGGCGTTCTAGCCTCTGTGAGTGGTACCAATGTGAAAATGCAAATAGTTCGTCTAAGAACTGAAGACGGGCAGAGGATCGTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003392-'39-49,'39-48,40-49
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGAAACATGCGCAGACCTGAA
R:
TTGGTACCACTCACAGAGGCT
Band lengths:
178-255
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]