BtaEX6072564 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000002328 | KDM2B
Description
lysine (K)-specific demethylase 2B [Source:HGNC Symbol;Acc:HGNC:13610]
Coordinates
chr17:55900488-55905199:+
Coord C1 exon
chr17:55900488-55900632
Coord A exon
chr17:55903697-55903775
Coord C2 exon
chr17:55905153-55905199
Length
79 bp
Sequences
Splice sites
3' ss Seq
TAATTCTCATCTCCAAACAGATT
3' ss Score
8.27
5' ss Seq
TAAGTAAGT
5' ss Score
8.07
Exon sequences
Seq C1 exon
CGCCCGATTGACCGCCAAAGATACGACGAGAACGAGGACTTGTCGGACGTGGAGGAGATCGTCAGCGCCCGCGGCTTCAGCCTGGAGGAAAAGCTGCGCAGCCAGCTGTACCAGGGGGATTTCGTGCACGCCATGGAGGGCAAAG
Seq A exon
ATTTCAACTATGAGTATGTGCAGAGAGAAGCTCTCAGAGTTCCCCTGGTATTTCGAGAAAAGGATGGCCTGGGAATTAA
Seq C2 exon
GATGCCTGACCCTGATTTCACAGTCCGAGATGTCAAACTCCTAGTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000002328-'5-2,'5-1,11-2=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.143 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF136211=Cupin_8=PU(4.2=52.9)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTGACCGCCAAAGATACGACG
R:
TCTCGGACTGTGAAATCAGGGT
Band lengths:
168-247
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]