MmuEX0025279 @ mm10
Exon Skipping
Gene
ENSMUSG00000029475 | Kdm2b
Description
lysine (K)-specific demethylase 2B [Source:MGI Symbol;Acc:MGI:1354737]
Coordinates
chr5:122982777-122987806:-
Coord C1 exon
chr5:122987662-122987806
Coord A exon
chr5:122984462-122984540
Coord C2 exon
chr5:122982777-122982823
Length
79 bp
Sequences
Splice sites
3' ss Seq
TAATTCAAATACCCAAACAGATT
3' ss Score
3.44
5' ss Seq
CAAGTAAGT
5' ss Score
10.08
Exon sequences
Seq C1 exon
CGTGCGATTGACCGCCAGAGATACGACGAGAACGAAGACTTGTCGGACGTGGAGGAAATTGTCAGCGTCCGTGGCTTCAGCCTGGAGGAGAAGCTACGTAGCCAGTTATACCAGGGGGACTTCGTGCATGCTATGGAAGGCAAAG
Seq A exon
ATTTTAACTATGAGTACGTACAGAGAGAAGCTCTCAGGGTCCCCCTGGTTTTTCGGGACAAGGATGGACTAGGGATCAA
Seq C2 exon
GATGCCAGACCCTGATTTCACAGTCCGAGACGTCAAACTCCTGGTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000029475_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.053 A=0.000 C2=0.030
Domain overlap (PFAM):
C1:
NO
A:
PF136211=Cupin_8=PU(0.5=3.7)
C2:
PF136211=Cupin_8=FE(7.3=100)
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGATTGACCGCCAGAGATACG
R:
AGGAGTTTGACGTCTCGGACT
Band lengths:
183-262
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types