GgaEX0005620 @ galGal4
Exon Skipping
Gene
ENSGALG00000004225 | KDM2B
Description
lysine (K)-specific demethylase 2B [Source:HGNC Symbol;Acc:HGNC:13610]
Coordinates
chr15:5562023-5569554:-
Coord C1 exon
chr15:5569410-5569554
Coord A exon
chr15:5566788-5566866
Coord C2 exon
chr15:5562023-5562069
Length
79 bp
Sequences
Splice sites
3' ss Seq
TTTGTTCCTTATTCAAACAGATT
3' ss Score
8.28
5' ss Seq
TAAGTAAGT
5' ss Score
8.07
Exon sequences
Seq C1 exon
CGGCCCATTGGCAGGAGGAGGTACGATGAGCACGAGGACCTCTCGGACGTGGAGGAAATCGTCAGCGTCAGGAGTTTCAATCTGGAGGAGAAATTAAAGAGCAAAACGTACCGCGGGGATTTCGTGCACTCTATGGACGGGAAAG
Seq A exon
ATTTTACTTTTGAGTATGTGCAAAGAGAAGCTCTCAGAGTTCCACTTATCTTCAGAAATAAGGATGGACTGGGAATTAA
Seq C2 exon
AATGCCTGACCCGGATTTCACCGTCAGAGATGTGAAGCTATTAGTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004225_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.102 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF136211=Cupin_8=PU(12.0=75.5)
A:
PF136211=Cupin_8=FE(8.4=100)
C2:
PF136211=Cupin_8=FE(5.2=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGGAGGAGGTACGATGAGCA
R:
GCTTCACATCTCTGACGGTGA
Band lengths:
172-251
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]