RnoEX0046415 @ rn6
Exon Skipping
Gene
ENSRNOG00000025702 | Kdm2b
Description
lysine demethylase 2B [Source:RGD Symbol;Acc:1310217]
Coordinates
chr12:39023328-39028076:+
Coord C1 exon
chr12:39023328-39023428
Coord A exon
chr12:39026347-39026425
Coord C2 exon
chr12:39027976-39028076
Length
79 bp
Sequences
Splice sites
3' ss Seq
CATTCAAATACCCCCAACAGATT
3' ss Score
5.1
5' ss Seq
CAAGTAAGT
5' ss Score
10.08
Exon sequences
Seq C1 exon
GGACGTGGAGGAAATTGTCAGCGTCCGTGGCTTCAGCCTGGAGGAGAAGCTACGTAGCCAGCTATACCAGGGGGACTTCGTGCATGCCATGGAAGGCAAAG
Seq A exon
ATTTTAACTATGAGTACGTACAGAGAGAAGCTCTCAGGGTTCCCCTGGTTTTTCGAGACAAGGATGGACTAGGAATCAA
Seq C2 exon
GATGCCAGACCCTGACTTCACAGTCCGAGACGTCAAACTCCTGGTGGGTAAGTGCCAAAGGCAGGGCAGGAGAAGGGCAGGGGAGGTCTTCACTGCCGCCC
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000025702-'0-2,'0-1,1-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
NA
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGGAAATTGTCAGCGTCCGT
R:
CTTCTCCTGCCCTGCCTTTG
Band lengths:
169-248
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]