HsaEX0033257 @ hg19
Exon Skipping
Gene
ENSG00000089094 | KDM2B
Description
lysine (K)-specific demethylase 2B [Source:HGNC Symbol;Acc:13610]
Coordinates
chr12:122012452-122016851:-
Coord C1 exon
chr12:122016707-122016851
Coord A exon
chr12:122013686-122013764
Coord C2 exon
chr12:122012452-122012498
Length
79 bp
Sequences
Splice sites
3' ss Seq
TAATTCAAATATCCAAACAGATT
3' ss Score
5.11
5' ss Seq
TAAGTAAGT
5' ss Score
8.07
Exon sequences
Seq C1 exon
CGCCCGATTGACCGCCAGCGATACGACGAGAACGAGGACTTGTCGGACGTGGAGGAGATCGTCAGCGTCCGCGGCTTCAGCCTGGAGGAGAAGCTTCGCAGCCAGCTGTACCAGGGGGACTTCGTGCACGCCATGGAGGGCAAAG
Seq A exon
ATTTCAACTATGAGTACGTACAGAGAGAAGCTCTCAGGGTTCCCCTGATATTTCGAGAAAAGGATGGACTGGGAATTAA
Seq C2 exon
GATGCCTGACCCTGATTTCACAGTCCGAGACGTCAAACTCCTAGTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000089094_CASSETTE2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
Show structural model
Features
Disorder rate (Iupred):
C1=0.161 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF136211=Cupin_8=PU(19.2=71.7)
A:
PF136211=Cupin_8=FE(11.6=100)
C2:
PF136211=Cupin_8=PU(2.5=25.0)
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGCGATACGACGAGAACGAG
R:
AGGAGTTTGACGTCTCGGACT
Band lengths:
172-251
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)