DreEX6089622 @ danRer10
Exon Skipping
Gene
ENSDARG00000046010 | kdm2bb
Description
lysine (K)-specific demethylase 2Bb [Source:ZFIN;Acc:ZDB-GENE-080225-13]
Coordinates
chr10:42069459-42074502:-
Coord C1 exon
chr10:42074358-42074502
Coord A exon
chr10:42071048-42071126
Coord C2 exon
chr10:42069459-42069505
Length
79 bp
Sequences
Splice sites
3' ss Seq
TTTCTTTTGCACCGGTCTAGATT
3' ss Score
6.96
5' ss Seq
AAGGTGAGA
5' ss Score
8.68
Exon sequences
Seq C1 exon
CGCTCGATCTGCCGGAGGATGTACGATGAGAATGAGGATCTGTCAGATGTGGAGGAGATCACCAATGTCAGGGGCTTCAGTCTGGAGGACAAACTGGACAGCGCTTCATACAACAGCCAGCTAGTGCAGTTCATGGAGGGGAAAG
Seq A exon
ATTTCACCTATGAATATGTTCAGAGAGAAGCGCTGCGGACCCCGCTTGTGTTTAAAGCCAAAGATGGACTGGGAATAAG
Seq C2 exon
GATGCCGGATCCAGAATTCACTGTGAGTGAAATCAAGGGTTTGGTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000046010-'3-3,'3-2,4-3=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.043 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF136211=Cupin_8=PU(3.4=29.6)
C2:
PF136211=Cupin_8=PU(6.7=88.2)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGGAGGATGTACGATGAGAATGA
R:
ACCAAACCCTTGATTTCACTCACA
Band lengths:
178-257
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]