BtaEX6074073 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000006730 | SUSD2
Description
Bos taurus sushi domain containing 2 (SUSD2), mRNA. [Source:RefSeq mRNA;Acc:NM_001205675]
Coordinates
chr17:73410533-73411859:+
Coord C1 exon
chr17:73410533-73410684
Coord A exon
chr17:73411081-73411248
Coord C2 exon
chr17:73411685-73411859
Length
168 bp
Sequences
Splice sites
3' ss Seq
CACCTCCCGCCCCCCGCCAGTGC
3' ss Score
6.59
5' ss Seq
CGGGTGAGG
5' ss Score
8.48
Exon sequences
Seq C1 exon
CTTCAAGGAGAGCATCCAGACCCACGGCTACGTGGACGCCTCTGGCCGAGTGCACTGCGTGTCGCCCCTGCTCTACGAGTCCGGCCGCATCCCGTTCACGCTCTCCATGAACAACGGCCGCTCCTTCCCGCGCTCGGGCACCTGGCTCTCTG
Seq A exon
TGCACCCAAGTAAAGTGTCGGACTCCGAGAAGAGCCAGCTGGTGAACGAGACCCGCTGGCAGTACTACGGCACTCCTGGCACGCAGGGCAACCTCACCCTGACCTGGAACACCTCGGCCCTGCCCTCGGACACCGTCACCATCGAGCTGTGGGGCTACGAGGAGACGG
Seq C2 exon
GGAAGCCGTATTCCCAGCAGTGGGCAGCAGCGTGGTCATACCTGTATTCCTTGGCTACCAACATCCACAACTCCGGTTCCTTCACCTTCACGCCGAAACCTGCCCCGCAGAACTTCCAGAGATGGGAAGTGGGTTCCCTCCGCATCGTGGACAGCAGACACAGCGCAGGGAAGCC
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000006730-'2-4,'2-2,3-4=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.035 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCTGCTCTACGAGTCCGG
R:
CTGTGTCTGCTGTCCACGATG
Band lengths:
250-418
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]