GgaEX0008206 @ galGal4
Exon Skipping
Gene
ENSGALG00000005824 | SUSD2
Description
sushi domain containing 2 [Source:HGNC Symbol;Acc:HGNC:30667]
Coordinates
chr15:7841141-7842389:-
Coord C1 exon
chr15:7842238-7842389
Coord A exon
chr15:7841563-7841730
Coord C2 exon
chr15:7841141-7841315
Length
168 bp
Sequences
Splice sites
3' ss Seq
TGGTTTTTCTTGTAATGCAGTAC
3' ss Score
4.76
5' ss Seq
CAGGTAAAG
5' ss Score
9.65
Exon sequences
Seq C1 exon
ATTCAAGCAGCAAGTCATAACCAGTGGCTATGTTGATAAGGATGGAAAAGCCCACTGCCTCTCCCCATTGCTGTATGAAACTGGTTTCATCCCCTTTGAAGTTTCTACAGATGGCGGGCTGACATTTCCCTACTCTGGAACTTGGTTGTCAG
Seq A exon
TACATCACAGCAAGGTTTCGGGTGGAGAAAAATGCACGTTGGTCAATGAGACCAAATGGCAGTACTATGGCACTCCTGGCACGGGTGGGAACTTAACTCTGACCTGGACACACCAGGCACTTGCAGCATCCCATATCAACATAGAAGTCTGGGGGTACCAGGAAACAG
Seq C2 exon
GTGACAGTTACTCAGAAAACTGGCTTGCTGAATGGAAATATCTTTATACTTTGGCAAGAGAAGCTCCCAATACAGGGACATTTTCTTTCATTCCTGTACCTGCTGAAGCAAATTACAATACATGGGACTTTGGAATTTTGAGAATTACCCCCAGCACCTATTCTGATGGGCAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000005824_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
Show structural model
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCTCTCCCCATTGCTGTATG
R:
AGGTGCTGGGGGTAATTCTCA
Band lengths:
255-423
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]