MmuEX6049056 @ mm10
Exon Skipping
Gene
ENSMUSG00000006342 | Susd2
Description
sushi domain containing 2 [Source:MGI Symbol;Acc:MGI:1918983]
Coordinates
chr10:75640775-75642276:-
Coord C1 exon
chr10:75642125-75642276
Coord A exon
chr10:75641433-75641600
Coord C2 exon
chr10:75640775-75640949
Length
168 bp
Sequences
Splice sites
3' ss Seq
GGACTCGCCCCTCTGTCCAGCAC
3' ss Score
4.68
5' ss Seq
CAGGTGGGG
5' ss Score
6.92
Exon sequences
Seq C1 exon
GTTTAAGGAGAGTATCCAAACCCTTGGCTATGTCGACGACTTCTATCAAGTGCACTGCATATCACCCTTGCTCTATGAAAGCGGCTATATTCCCTTCACCATATCAATGGACAATGGCCGCTCCTTCCCTCATGCAGGCACTTGGCTAGCTG
Seq A exon
CACATCCCTACAAAGTGTCTGAATCCGAGAAGAGCCAGCTGGTGAACGAGACCCATTGGCAATACTACGGCACTTCAGACACCAGGGGAAACCTCAACCTCACCTGGGACACTTCAGCGCTGCCCACGCCGGCCGTCACCATTGAGCTGTGGGGCTATGAGGAGACAG
Seq C2 exon
GAAAACCCTACTCTGGGAACTGGACCTCGAAGTGGTCCTATCTGTACCCTTTGGCTACAAACATCCCCAATACCGGCTTCTTCACTTTCACCCCCAAACCCGCATCACCTCAGTACCAGAGGTGGAAAGTGGGTGCTCTGAGGATCAGCAGCAGCAGGAACTACCCAGGAGAGAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000006342-'2-4,'2-3,3-4
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCACTGCATATCACCCTTGCT
R:
CTCAGAGCACCCACTTTCCAC
Band lengths:
243-411
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types