MmuEX6049056 @ mm9
Exon Skipping
Gene
ENSMUSG00000006342 | Susd2
Description
sushi domain containing 2 [Source:MGI Symbol;Acc:MGI:1918983]
Coordinates
chr10:75103520-75105021:-
Coord C1 exon
chr10:75104870-75105021
Coord A exon
chr10:75104178-75104345
Coord C2 exon
chr10:75103520-75103694
Length
168 bp
Sequences
Splice sites
3' ss Seq
GGACTCGCCCCTCTGTCCAGCAC
3' ss Score
4.68
5' ss Seq
CAGGTGGGG
5' ss Score
6.92
Exon sequences
Seq C1 exon
GTTTAAGGAGAGTATCCAAACCCTTGGCTATGTCGACGACTTCTATCAAGTGCACTGCATATCACCCTTGCTCTATGAAAGCGGCTATATTCCCTTCACCATATCAATGGACAATGGCCGCTCCTTCCCTCATGCAGGCACTTGGCTAGCTG
Seq A exon
CACATCCCTACAAAGTGTCTGAATCCGAGAAGAGCCAGCTGGTGAACGAGACCCATTGGCAATACTACGGCACTTCAGACACCAGGGGAAACCTCAACCTCACCTGGGACACTTCAGCGCTGCCCACGCCGGCCGTCACCATTGAGCTGTGGGGCTATGAGGAGACAG
Seq C2 exon
GAAAACCCTACTCTGGGAACTGGACCTCGAAGTGGTCCTATCTGTACCCTTTGGCTACAAACATCCCCAATACCGGCTTCTTCACTTTCACCCCCAAACCCGCATCACCTCAGTACCAGAGGTGGAAAGTGGGTGCTCTGAGGATCAGCAGCAGCAGGAACTACCCAGGAGAGAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000006342-'2-3,'2-2,3-3=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCACTGCATATCACCCTTGCT
R:
CTCAGAGCACCCACTTTCCAC
Band lengths:
243-411
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: