DreEX6009745 @ danRer10
Exon Skipping
Gene
ENSDARG00000101452 | SUSD2
Description
sushi domain containing 2 [Source:HGNC Symbol;Acc:HGNC:30667]
Coordinates
chr5:15885435-15892171:+
Coord C1 exon
chr5:15885435-15885583
Coord A exon
chr5:15887721-15887888
Coord C2 exon
chr5:15891997-15892171
Length
168 bp
Sequences
Splice sites
3' ss Seq
CTGATTGTGTGATTGTGCAGTTC
3' ss Score
6.05
5' ss Seq
CTGGTGAGT
5' ss Score
10.1
Exon sequences
Seq C1 exon
GTTCAGCTCAGAGATCTTGACGGAGGGTTATGTGGACGAGAGCGGTGCGGGTCACTGTATTTCTCCTCTGCTCTATGAGTCCGGATGGATCCCGTTTGAAGTGTCCACTGATGGGCTGAATTATGACCGATCGGGGAAGTGGCTCTCAG
Seq A exon
TTCATCACAGTAAACTGGGTCCTGCCTATAAGATCATTCTGGGTAACGCCACTCAGTGGCAGTATTACGGCACTCCAGGAGTCGGCGGAGATCTGAAGATGACATGGATTTCATCTCTAATAAAAGCAGAGAGAGTCAATGTTGAGCTGTGGGGTTACAGTGAGACTG
Seq C2 exon
GAGAGGCATATTCTTCTGACTGGGAGGCGGAGTGGAAATATCTGTACAGTGTAGGCAGAGATGTGCCCAACACTGGCGTTTTCAGTTTCACCCCACAGATCGCAGATAACCCATTCTCCCTCTGGGACCTGGGGAGCATGAGGATCAGTCCCAGCACCAAACCTGACGGGGCCCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000101452-'2-4,'2-3,3-4=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTCTGCTCTATGAGTCCGGA
R:
GTTTGGTGCTGGGACTGATCC
Band lengths:
247-415
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]