RnoEX0087765 @ rn6
Exon Skipping
Gene
ENSRNOG00000033389 | Susd2
Description
sushi domain containing 2 [Source:RGD Symbol;Acc:1308595]
Coordinates
chr20:13966860-13968368:+
Coord C1 exon
chr20:13966860-13967011
Coord A exon
chr20:13967542-13967709
Coord C2 exon
chr20:13968194-13968368
Length
168 bp
Sequences
Splice sites
3' ss Seq
ATGGGCTCCCCTCTCTGCAGCTC
3' ss Score
9.21
5' ss Seq
CAGGTGGGG
5' ss Score
6.92
Exon sequences
Seq C1 exon
GTTTAAGGAGAGTATCCAGACCCTTGGCTATGTGGACGACTTGAAGCAAGTGCACTGTATATCACCCTTGCTCTACGAAAGCGGCCATATTCCCTTCACCATCTCAATGGACAATGGCCTCTCCTTTCCCCACGCAGGCACTTGGCTAGCTG
Seq A exon
CTCACCCCTACAAAGTCTCTGAGTCTGAGAAGAGCCAGCTAGTAAACGAGACCCATTGGCAATACTATGGTACTTCAGACACCGGGGGAAACCTCAGCCTCACCTGGAATACCTCAGCGCTGCCCACGCGGACCGTCACCATTGAGCTGTGGGGCTATGAGGAGACAG
Seq C2 exon
GGACGCCCTACACTGGGAACTGGACTGCGAAGTGGTCCTATCTATACCCTTTGGCTACAAACATCCCCAATACTGGCTTCTTTACTTTCACCCCCAAACCTGCACCACCTCAGTACCAGAGGTGGAGAGTGGGTGCTCTGAGGATCATTGGCAGCAAGAACTACGCAGGAGAACA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000033389-'2-4,'2-2,3-4
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGAAAGCGGCCATATTCCCTT
R:
TGCGTAGTTCTTGCTGCCAAT
Band lengths:
244-412
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]