HsaEX6026055 @ hg19
Exon Skipping
Gene
ENSG00000099994 | SUSD2
Description
sushi domain containing 2 [Source:HGNC Symbol;Acc:30667]
Coordinates
chr22:24579463-24580908:+
Coord C1 exon
chr22:24579463-24579614
Coord A exon
chr22:24580104-24580271
Coord C2 exon
chr22:24580734-24580908
Length
168 bp
Sequences
Splice sites
3' ss Seq
CCCTCACCTCCCCTGCCCAGTGC
3' ss Score
7.64
5' ss Seq
CAGGTGAGG
5' ss Score
10.07
Exon sequences
Seq C1 exon
GTTTAAGGACAGCATCCAGACCCTCGGCCATGTGGACTCCTCCGGGCAAGTGCACTGTGTGTCACCTCTGCTCTATGAGAGCGGCCGCATCCCCTTCACTGTGTCACTGGACAACGGCCACTCCTTCCCTCGTGCGGGCACCTGGCTGGCTG
Seq A exon
TGCACCCCAACAAAGTGTCAATGATGGAGAAGAGCGAGTTGGTGAACGAGACGCGTTGGCAATACTACGGCACCGCCAACACCTCAGGCAACCTCAGCCTGACCTGGCATGTCAAGTCGCTGCCCACGCAGACCATCACCATCGAACTGTGGGGCTACGAGGAGACAG
Seq C2 exon
GAATGCCCTACTCACAGGAGTGGACTGCAAAGTGGTCGTACCTGTACCCCCTGGCCACACACATCCCCAACTCCGGCTCTTTCACTTTCACCCCAAAACCTGCTCCTCCCAGCTACCAGAGATGGCGAGTGGGTGCACTTCGGATCATCGACAGCAAAAATTACGCAGGGCAGAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000099994-'2-4,'2-3,3-4=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.017
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTGTGTGTCACCTCTGCTCT
R:
TGTCGATGATCCGAAGTGCAC
Band lengths:
252-420
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)