BtaEX6074115 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000020566 | BCR
Description
breakpoint cluster region [Source:HGNC Symbol;Acc:HGNC:1014]
Coordinates
chr17:73714335-73716669:-
Coord C1 exon
chr17:73716548-73716669
Coord A exon
chr17:73715504-73715672
Coord C2 exon
chr17:73714335-73714454
Length
169 bp
Sequences
Splice sites
3' ss Seq
CGCCCCCGCCCCACATCCAGCAA
3' ss Score
5.56
5' ss Seq
AAGGTGCGT
5' ss Score
9.49
Exon sequences
Seq C1 exon
CACCGGCAGCTGCTCAAGGACAGCTTCATGGTGGAGCTGGTGGAGGGGGCCCGCAAGCTGCGGCACGTCTTCCTCTTCACAGACCTGCTGCTCTGCACCAAGCTCAAGAAGCAGAGCGGGGG
Seq A exon
CAAAGCCCAGCAGTACGACTGCAAGTGGTACATCCCGCTCACGGACCTCAGCTTCCAGACGGTGGACGAGTCGGAGGCTGCACCCAGCATCCCTCTGGTGCTGGACGAGGAGCTGGATGCCATGAAGGTCAAGATCTCCCAGATCAAGAGTGACATCCAGAGAGAGAAG
Seq C2 exon
AGAGCAAACAAGGGCAGCAAGGCCATCGAGAGGCTGAGGAAGAAGCTCTCGGAGCAGGAGTCGCTGCTGCTCCTCATGTCCCCGAATATGGCCTTCCGCGTGCACAGCCGCAACGGGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000020566-'17-19,'17-17,18-19=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0016924=PH=FE(24.4=100)
A:
PF0016924=PH=FE(34.1=100)
C2:
PF0016924=PH=FE(23.8=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACCGGCAGCTGCTCAAG
R:
CTTCCCGTTGCGGCTGTG
Band lengths:
242-411
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]