RnoEX6062426 @ rn6
Exon Skipping
Gene
ENSRNOG00000001304 | Bcr
Description
BCR, RhoGEF and GTPase activating protein [Source:RGD Symbol;Acc:1307993]
Coordinates
chr20:14450839-14454081:-
Coord C1 exon
chr20:14453960-14454081
Coord A exon
chr20:14452871-14453039
Coord C2 exon
chr20:14450839-14450958
Length
169 bp
Sequences
Splice sites
3' ss Seq
CCGCTTCCTCTCCACCCCAGCAA
3' ss Score
6.51
5' ss Seq
AAGGTGGGA
5' ss Score
6.03
Exon sequences
Seq C1 exon
CACCGGCAGCTGCTGAAGGATAGCTTCATGGTGGAGCTGGTGGAGGGGGCCCGCAAGCTGCGTCACATCTTCCTGTTCACTGACCTGCTCCTCTGCACCAAGCTGAAGAAACAAAGTGGAGG
Seq A exon
CAAAACCCAGCAATATGACTGTAAATGGTACATTCCGCTCACGGACCTCAGCTTCCAGATGGTGGACGAGTTGGAGGCACTACCCAACATCCCTCTGGTGCCAGATGAGGAACTGGATGCCTTGAAGATCAAAATCTCCCAAATCAAGAGCGACATCCAACGAGAGAAG
Seq C2 exon
AGAGCAAACAAGGGCAGCAAGGTCATGGAGAGGCTGAGGAAGAAGCTGTCAGAGCAGGAATCGCTGCTGCTGTTGATGTCCCCCAGCATGGCCTTCAGGGTGCACAGTCGCAATGGCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000001304-'14-13,'14-12,15-13=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.018 C2=0.125
Domain overlap (PFAM):
C1:
PF0016924=PH=FE(24.5=100)
A:
PF0016924=PH=FE(34.4=100)
C2:
PF0016924=PH=FE(23.9=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAGCTGCTGAAGGATAGCTT
R:
CTTGCCATTGCGACTGTGCA
Band lengths:
237-406
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]