DreEX6050522 @ danRer10
Exon Skipping
Gene
ENSDARG00000042329 | BCR (1 of 2)
Description
breakpoint cluster region [Source:HGNC Symbol;Acc:HGNC:1014]
Coordinates
chr8:30560929-30561553:+
Coord C1 exon
chr8:30560929-30561050
Coord A exon
chr8:30561179-30561344
Coord C2 exon
chr8:30561434-30561553
Length
166 bp
Sequences
Splice sites
3' ss Seq
GTGTGTGTGTGTGTGTTCAGGAA
3' ss Score
9.93
5' ss Seq
AAGGTGGAT
5' ss Score
3.2
Exon sequences
Seq C1 exon
AATCGACAGCTTCTTCGAGACCAGTTTATGGTGGAGTTAGTAGAAGGTGCACGAAAACTGCGACACGTCTTCCTCTTTACCGACATTCTGCTCTGCGCTAAATTGAAGAAACAAACTGGAGG
Seq A exon
GAAGGGGCAGCAGTATGACTGTAAGTGGTATATCCCGCTAGCGGACGTCACCTTCCAGACCATCGATGAGTCTGAGTCCTCGCCTGTTCCACAGATACCAGAAGAGGAGATTGATGCTTTGAAGGTCAAGATCTCTCAGATCAAAAACGAGATCCAGCGGGAAAAG
Seq C2 exon
AGAGTGTGTAAAGGAGGAAAAGTGCTGGATCGCCTCAGGAAGAAACTGTGCGAACAGGAATCGCTGCTTCTCCTTATGTCTCCCTGCATGGCCTTCAGAGTCAGTAACAGGAACGGCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000042329-'12-13,'12-12,13-13=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.054 C2=0.000
Domain overlap (PFAM):
C1:
PF0016924=PH=FE(24.4=100)
A:
PF0016924=PH=FE(33.5=100)
C2:
PF0016924=PH=FE(23.8=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AATCGACAGCTTCTTCGAGACC
R:
CTTGCCGTTCCTGTTACTGACT
Band lengths:
242-408
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]