MmuEX6049014 @ mm9
Exon Skipping
Gene
ENSMUSG00000009681 | Bcr
Description
breakpoint cluster region [Source:MGI Symbol;Acc:MGI:88141]
Coordinates
chr10:74616631-74619942:+
Coord C1 exon
chr10:74616631-74616752
Coord A exon
chr10:74617643-74617811
Coord C2 exon
chr10:74619823-74619942
Length
169 bp
Sequences
Splice sites
3' ss Seq
CCACTCCCTCTCCACCCCAGCAA
3' ss Score
6.05
5' ss Seq
AAGGTGTGA
5' ss Score
4.59
Exon sequences
Seq C1 exon
CACCGGCAGCTGCTGAAGGACAGCTTTATGGTAGAGCTGGTGGAGGGGGCCCGCAAGCTGCGTCACATCTTCCTGTTCACTGACCTGCTCCTCTGCACCAAGCTGAAGAAGCAAAGTGGAGG
Seq A exon
CAAAACCCAGCAATATGACTGTAAATGGTACATTCCGCTCACGGACCTCAGCTTCCAGATGGTGGATGAATTGGAGGCACTACCCAACATCCCTCTGGTGCCAGATGAGGAACTGGATGCCTTGAAGATCAAAATCTCCCAAATCAAGAGCGACATCCAACGAGAGAAG
Seq C2 exon
AGAGCAAATAAGGGCAGCAAGGTCATGGAGAGGCTGAGGAAGAAGCTGTCAGAGCAGGAGTCACTGCTGCTGTTAATGTCTCCCAGCATGGCCTTCCGCGTTCACAGTCGCAACGGCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000009681-'10-14,'10-12,11-14=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.013 C2=0.100
Domain overlap (PFAM):
C1:
PF0016924=PH=FE(24.5=100)
A:
PF0016924=PH=FE(34.4=100)
C2:
PF0016924=PH=FE(23.9=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCAGCTGCTGAAGGACA
R:
CTTGCCGTTGCGACTGTGAA
Band lengths:
238-407
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: