GgaEX6014159 @ galGal4
Exon Skipping
Gene
ENSGALG00000006695 | BCR
Description
breakpoint cluster region [Source:HGNC Symbol;Acc:HGNC:1014]
Coordinates
chr15:8598247-8600024:-
Coord C1 exon
chr15:8599903-8600024
Coord A exon
chr15:8598894-8599062
Coord C2 exon
chr15:8598247-8598366
Length
169 bp
Sequences
Splice sites
3' ss Seq
TTGGACCTTCTGTCTTTCAGAAA
3' ss Score
9.35
5' ss Seq
AAGGTAAAA
5' ss Score
8.38
Exon sequences
Seq C1 exon
CACCGGCAGCTCCTGAAGGACAGCTTCATGGTGGAGCTCGTTGAGGGGGCTCGCAAACTACGTCACGTCTTTCTTTTTACTGATCTGTTCCTGTGTGCCAAGCTCAAGAAGCAGATTGGAGG
Seq A exon
AAAAAGCCAGCAGTATGACTGCAAATGGTACATCCCACTCACTGACCTTAGTTTCCAAATGGTGGATGAGTCCGAGGCAGTGCCCAACATCCCACTGGTACCTGATGAGGAACTGGATGCCATGAAGATCAAGATATCACAAATCAAGAATGATATCCAGCGTGAAAAG
Seq C2 exon
AGGGCCAATAAGGGCAGCAAGGTCATTGAGAGGTTGAAAAAGAAGCTCTCAGAACAGGAATCACTCCTGCTGCTGATGTCTCCCAACATGGCTTTCCGGGTGCACAATCGCAATGGCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000006695-'27-18,'27-17,29-18=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0016924=PH=FE(24.5=100)
A:
PF0016924=PH=FE(34.4=100)
C2:
PF0016924=PH=FE(23.9=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACCGGCAGCTCCTGAAG
R:
CTTGCCATTGCGATTGTGCAC
Band lengths:
242-411
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]