DreEX6083904 @ danRer10
Exon Skipping
Gene
ENSDARG00000079286 | bcr
Description
breakpoint cluster region [Source:ZFIN;Acc:ZDB-GENE-040724-43]
Coordinates
chr21:17205136-17206196:+
Coord C1 exon
chr21:17205136-17205257
Coord A exon
chr21:17205733-17205898
Coord C2 exon
chr21:17206077-17206196
Length
166 bp
Sequences
Splice sites
3' ss Seq
GGCTGTCTGTGTGTGTACAGGAA
3' ss Score
8.46
5' ss Seq
AGGGTACAT
5' ss Score
3.77
Exon sequences
Seq C1 exon
AACCGTCAGCTGTTGAAGGATGGCTTTATGGTGGAACTTGTCGAAGGAGCTCGAAAACTACGCCATGTTTTTCTCTTCACTGACCTCCTGCTCTGTGCCAAACTGAAGAAACTGATTGGAGG
Seq A exon
GAAGAGCCAGCAATACGATTCTAAGTGGTACATTCCTCTCTCGGACCTCACTTTCCAAACAGCAGAGGAGTCCGAGCCCCTGCCAATCCCACAAGCCCCTGATGAAGAGCTGGATGCCATTAAAATCAAGATCTCTTCCCTGAGGAGTGAGATCCAGAGAGAGAGG
Seq C2 exon
AGAGCCAACAAAGGGTCAAAAGTAATGGAGAGGCTGAAAAAGAAACTGTCAGAACAGGAATCTCTGTTTCTGTTGAACTCTCCCAACATGCCCCTTAGAGTCCACAACCGCAACGGGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000079286-'16-13,'16-12,17-13=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.161 C2=0.225
Domain overlap (PFAM):
C1:
PF0016924=PH=PU(23.6=90.2)
A:
PF0016924=PH=FE(35.0=100)
C2:
PF0016924=PH=FE(24.8=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGTCAGCTGTTGAAGGATGGC
R:
CGTTGCGGTTGTGGACTCTAA
Band lengths:
234-400
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]