MmuEX6049014 @ mm10
Exon Skipping
Gene
ENSMUSG00000009681 | Bcr
Description
breakpoint cluster region [Source:MGI Symbol;Acc:MGI:88141]
Coordinates
chr10:75145322-75157197:+
Coord C1 exon
chr10:75145322-75145462
Coord A exon
chr10:75154898-75155066
Coord C2 exon
chr10:75157078-75157197
Length
169 bp
Sequences
Splice sites
3' ss Seq
CCACTCCCTCTCCACCCCAGCAA
3' ss Score
6.05
5' ss Seq
AAGGTGTGA
5' ss Score
4.59
Exon sequences
Seq C1 exon
GACTTGCTAAAACACACCCCGTCCAGCCATCCCGACCATTCCCTGCTGCAAGACGCCCTCCGAATCTCTCAGAACTTCCTGTCCAGCATCAACGAGGAGATCACGCCCCGCCGACAGTCCATGACGGTGAAAAAAGGAGAG
Seq A exon
CAAAACCCAGCAATATGACTGTAAATGGTACATTCCGCTCACGGACCTCAGCTTCCAGATGGTGGATGAATTGGAGGCACTACCCAACATCCCTCTGGTGCCAGATGAGGAACTGGATGCCTTGAAGATCAAAATCTCCCAAATCAAGAGCGACATCCAACGAGAGAAG
Seq C2 exon
AGAGCAAATAAGGGCAGCAAGGTCATGGAGAGGCTGAGGAAGAAGCTGTCAGAGCAGGAGTCACTGCTGCTGTTAATGTCTCCCAGCATGGCCTTCCGCGTTCACAGTCGCAACGGCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000009681_MULTIEX1-2/2=C1-C2
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.234 A=0.012 C2=0.067
Domain overlap (PFAM):
C1:
PF0062115=RhoGEF=PD(16.4=66.0),PF0016924=PH=PU(0.6=2.1)
A:
PF0016924=PH=FE(34.4=100)
C2:
PF0016924=PH=FE(23.9=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTGCTAAAACACACCCCGTCC
R:
CTTGCCGTTGCGACTGTGAA
Band lengths:
258-427
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types