BtaEX6076055 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000021972 | DNAH5
Description
dynein, axonemal, heavy chain 5 [Source:HGNC Symbol;Acc:HGNC:2950]
Coordinates
chr20:59316865-59323762:+
Coord C1 exon
chr20:59316865-59316972
Coord A exon
chr20:59321952-59322037
Coord C2 exon
chr20:59323441-59323762
Length
86 bp
Sequences
Splice sites
3' ss Seq
CAGACTTCATTCTGTTTCAGAAA
3' ss Score
7.9
5' ss Seq
AAGGTAAAA
5' ss Score
8.38
Exon sequences
Seq C1 exon
GGTATTGTTGCTACCATAAAGAAAAAGGAGTATGATTTCTTAGACCAGCGGAAAATGGAATTTGAGCAGGATTACGAAGAGTTTTGCAAGCAGATTAATGACCTTCAT
Seq A exon
AAAGAGTTGCAGAAGTTCATGGATGCTACATTTGAAAAGATTCAAAACACAAATCAAGCTCTAAGTATGTTAAAGAGATTTGAAAG
Seq C2 exon
ATTGAACATACCTAATCTTGGTATTGATGACAAGTACCAGCGTATCCTTGAAAACTACGGGGCTGACATTGATATGATCTCGAAGCTGTATACAAAGCAGAAAAACGACCCACCTTTGGCTCGAGACCAGCCTCCCATTGCTGGGAAGATTCTGTGGGCCCGGCAGCTCTTCCACAGGATTCAGCAACCAATGCAGCTTTTTCAGAAGCACCCATCCGTGCTCCGGACTGCGGAAGCGAAGCCAGTGATTCGCAGTTACAACAGGGTGGCCAAGGTCCTCCTGGAGTTTGAGGTTCTCTACCACAGGGCGTGGCTTCAACAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000021972-'13-12,'13-11,14-12=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.065
Domain overlap (PFAM):
C1:
PF083857=DHC_N1=FE(6.3=100)
A:
PF083857=DHC_N1=FE(5.0=100)
C2:
PF083857=DHC_N1=FE(19.1=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCGGAAAATGGAATTTGAGCAGG
R:
GCCAAAGGTGGGTCGTTTTTC
Band lengths:
181-267
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]