GgaEX6020607 @ galGal3
Exon Skipping
Gene
ENSGALG00000012997 | DNAH5
Description
NA
Coordinates
chr2:78520919-78522877:+
Coord C1 exon
chr2:78520919-78521026
Coord A exon
chr2:78521708-78521793
Coord C2 exon
chr2:78522556-78522877
Length
86 bp
Sequences
Splice sites
3' ss Seq
AATTATTTGCTCTCCTTCAGAGT
3' ss Score
9.07
5' ss Seq
AAGGTACTA
5' ss Score
7.52
Exon sequences
Seq C1 exon
AGTATTGTTGACATCATGAAGAAAAAGGATTACAATTTCTTGGATCAACGGAAGGCTGATTTTGACCGAGACTATGAAGAGTTTTGCAAAGAGATAAATGATCTACAT
Seq A exon
AGTCAGTTAAAGATTTTTATGGACAATACCTTTGAAAATATTCCGAACACTGAAAGAGCACTGTGTATGTTGAAGAAATTTGAAAG
Seq C2 exon
ATTACAAATCCCCAATCTTGGCATTAATGAAATGTATCAGAAAATCCTTCAGAACTATGGATATGACATAGAAGCAGTCTGTAAACTCTACACTAGGCAGAAGCAGGATCCTCCACTGGCTCGTAATCTGCCTCCAATAGCTGGTAAGATCTTGTGGGCACGCCACCTATTCCATAGGATCCAGCAGCCCATGAATTCTTTCCAGCAGCACCCAGCTGTTCTGCAAACACCGGATGGCAAGCGCATAATCCACAACTACAACAAAGTAGCGAGAGTTCTTATGGAGTTTGAGGTGATCTATCACAGGGGATGGCTTCAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012997-'10-12,'10-11,11-12=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.009
Domain overlap (PFAM):
C1:
PF083857=DHC_N1=FE(6.3=100)
A:
PF083857=DHC_N1=FE(5.0=100)
C2:
PF083857=DHC_N1=FE(19.1=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGGAAGGCTGATTTTGACCGA
R:
GGAGGATCCTGCTTCTGCCTA
Band lengths:
174-260
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]