RnoEX0028530 @ rn6
Exon Skipping
Gene
ENSRNOG00000048363 | Dnah5
Description
dynein, axonemal, heavy chain 5 [Source:RGD Symbol;Acc:1560828]
Coordinates
chr2:80985569-80990036:+
Coord C1 exon
chr2:80985569-80985676
Coord A exon
chr2:80989131-80989216
Coord C2 exon
chr2:80989715-80990036
Length
86 bp
Sequences
Splice sites
3' ss Seq
GACTTTTGTTCCGTTTTCAGAGT
3' ss Score
10.69
5' ss Seq
AAGGTATCG
5' ss Score
8.7
Exon sequences
Seq C1 exon
GACGTTGTTGCTGGCATAAAGAAGAAGGAGTATAACTTCTTAGATCAACGGAAAATGGATTTTGACCAAGATTATGATGAGTTTTGCAAGCAGACGAATGAGCTCCAC
Seq A exon
AGTGAACTGCAAAGGTTCATGGACACCACATTCGAAAAGATTCAAAGCACAAGGCAAGCTCTGAGCACGCTGAAGAAATTCGAAAG
Seq C2 exon
ATTGAATATACCTAACCTTGGTATTGAGGCGAAATACCAAATAGTTTTTCAGAATTTTGGGACTGACATCGACATGATTTCTAAGCTGTATACGAAACAGAAGTACGATCCTCCCTTGGCTCGCGATCAGCCTCCCATAGCTGGGAAGATCTTGTGGGCCCGGCAGCTATTCCACAGGCTGGAGCAGCCAATGCAACTCTTCCAGCAGCACCCTTTTGTGCTGAGGACTGTGGAGGCCAAACCTGTGATCCGCAGTTATAACAGGATAGCCAAGGTCCTCTTGGAGTTTGAGGTCCTCTACCATAGAGCCTGGCTTCAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000048363-'12-13,'12-12,13-13
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF083857=DHC_N1=FE(6.3=100)
A:
PF083857=DHC_N1=FE(5.0=100)
C2:
PF083857=DHC_N1=FE(19.1=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCAAGCAGACGAATGAGCTC
R:
GCCCACAAGATCTTCCCAGC
Band lengths:
183-269
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]