HsaEX6097356 @ hg38
Exon Skipping
Gene
ENSG00000039139 | DNAH5
Description
dynein axonemal heavy chain 5 [Source:HGNC Symbol;Acc:HGNC:2950]
Coordinates
chr5:13901252-13911493:-
Coord C1 exon
chr5:13911386-13911493
Coord A exon
chr5:13902053-13902138
Coord C2 exon
chr5:13901252-13901573
Length
86 bp
Sequences
Splice sites
3' ss Seq
CAGATTTTATTCTGTTTTAGAAC
3' ss Score
8.79
5' ss Seq
AAGGTAAAA
5' ss Score
8.38
Exon sequences
Seq C1 exon
GGCATTGTGGCAACCATAAAGAAAAAGGAATACAATTTCCTAGACCAGCGGAAAATGGATTTTGACCAAGATTACGAAGAGTTTTGCAAGCAGACTAATGACCTTCAT
Seq A exon
AACGAGTTGCGGAAGTTCATGGATGTTACATTTGCAAAGATTCAAAACACAAATCAAGCTCTAAGAATGTTGAAGAAATTTGAAAG
Seq C2 exon
ATTGAATATACCTAATCTTGGTATTGATGACAAATATCAACTTATCCTTGAGAACTATGGGGCTGACATTGATATGATTTCAAAGCTGTATACAAAGCAGAAATACGATCCTCCTCTGGCTCGAAACCAGCCTCCCATCGCTGGAAAGATTTTGTGGGCCCGCCAGCTCTTCCATAGGATTCAGCAGCCCATGCAGCTTTTCCAGCAGCACCCAGCTGTGCTAAGCACGGCAGAAGCCAAACCTATAATTCGCAGTTACAACAGGATGGCCAAGGTCCTCCTGGAGTTTGAGGTCCTCTTCCACAGGGCGTGGCTTCGGCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000039139-'18-19,'18-18,21-19=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF083857=DHC_N1=FE(6.3=100)
A:
PF083857=DHC_N1=FE(5.0=100)
C2:
PF083857=DHC_N1=FE(19.1=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCAAGCAGACTAATGACCTTCA
R:
GCCCACAAAATCTTTCCAGCG
Band lengths:
183-269
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains