MmuEX6053085 @ mm9
Exon Skipping
Gene
ENSMUSG00000022262 | Dnahc5
Description
dynein, axonemal, heavy chain 5 [Source:MGI Symbol;Acc:MGI:107718]
Coordinates
chr15:28172412-28176324:+
Coord C1 exon
chr15:28172412-28172519
Coord A exon
chr15:28175417-28175502
Coord C2 exon
chr15:28176003-28176324
Length
86 bp
Sequences
Splice sites
3' ss Seq
GAGTTTGGTTCTGTTTTCAGAAT
3' ss Score
8.24
5' ss Seq
AAGGTAAAG
5' ss Score
9.06
Exon sequences
Seq C1 exon
GACATTGTTGCTGCCATAAAGAAGAAAGAGTATAACTTCTTAGATCAACGGGAAATGGATTTTGACCAAGATTATGAAGAGTTTTGCAAGCGGATTAATGAGCTTCAT
Seq A exon
AATGACCTGCAGAGGTTCATGGACATCACATTTGAAAAGATTCCAAGCACGAGGCAAGCTCTAAGCACGCTGAAGAAATTCGAAAG
Seq C2 exon
ACTGAATATACCTAATCTTGGTATTGAGGAAAAATACCAAATAATTTTCCAGAATTTTGCGACTGACATCGACACGATTTCTAAGCTGTATACGAAACAGAAGTACGATCCGCCCTTGGCTCGCAACCAGCCCCCCATAGCTGGGAAGATCTTGTGGGCCCGGCAGCTATTCCACAGGCTGGAGCAGCCAATGCAACTCTTCCAGCAGCATCCCTTTGTGCTGAGGACTGCGGAGGCCAAACCTGTGATCCGCAGCTATAACAGGATAGCCAAGGTCCTCTTGGAGTTTGAGGTCCTCTACCACAGGGCCTGGCTTCAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000022262-'11-12,'11-11,12-12=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF083857=DHC_N1=FE(6.3=100)
A:
PF083857=DHC_N1=FE(5.0=100)
C2:
PF083857=DHC_N1=FE(19.1=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACGGGAAATGGATTTTGACCA
R:
CAAGGGCGGATCGTACTTCTG
Band lengths:
179-265
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: