MmuEX6053085 @ mm10
Exon Skipping
Gene
ENSMUSG00000022262 | Dnah5
Description
dynein, axonemal, heavy chain 5 [Source:MGI Symbol;Acc:MGI:107718]
Coordinates
chr15:28242657-28246569:+
Coord C1 exon
chr15:28242657-28242764
Coord A exon
chr15:28245662-28245747
Coord C2 exon
chr15:28246248-28246569
Length
86 bp
Sequences
Splice sites
3' ss Seq
GAGTTTGGTTCTGTTTTCAGAAT
3' ss Score
8.24
5' ss Seq
AAGGTAAAG
5' ss Score
9.06
Exon sequences
Seq C1 exon
GACATTGTTGCTGCCATAAAGAAGAAAGAGTATAACTTCTTAGATCAACGGGAAATGGATTTTGACCAAGATTATGAAGAGTTTTGCAAGCGGATTAATGAGCTTCAT
Seq A exon
AATGACCTGCAGAGGTTCATGGACATCACATTTGAAAAGATTCCAAGCACGAGGCAAGCTCTAAGCACGCTGAAGAAATTCGAAAG
Seq C2 exon
ACTGAATATACCTAATCTTGGTATTGAGGAAAAATACCAAATAATTTTCCAGAATTTTGCGACTGACATCGACACGATTTCTAAGCTGTATACGAAACAGAAGTACGATCCGCCCTTGGCTCGCAACCAGCCCCCCATAGCTGGGAAGATCTTGTGGGCCCGGCAGCTATTCCACAGGCTGGAGCAGCCAATGCAACTCTTCCAGCAGCATCCCTTTGTGCTGAGGACTGCGGAGGCCAAACCTGTGATCCGCAGCTATAACAGGATAGCCAAGGTCCTCTTGGAGTTTGAGGTCCTCTACCACAGGGCCTGGCTTCAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000022262-'11-22,'11-11,16-22=AN
Average complexity
A_C2
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF083857=DHC_N1=FE(6.3=100)
A:
PF083857=DHC_N1=FE(5.0=100)
C2:
PF083857=DHC_N1=FE(19.1=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACGGGAAATGGATTTTGACCA
R:
CAAGGGCGGATCGTACTTCTG
Band lengths:
179-265
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types