HsaEX6097356 @ hg19
Exon Skipping
Gene
ENSG00000039139 | DNAH5
Description
dynein, axonemal, heavy chain 5 [Source:HGNC Symbol;Acc:2950]
Coordinates
chr5:13901361-13911602:-
Coord C1 exon
chr5:13911495-13911602
Coord A exon
chr5:13902162-13902247
Coord C2 exon
chr5:13901361-13901682
Length
86 bp
Sequences
Splice sites
3' ss Seq
CAGATTTTATTCTGTTTTAGAAC
3' ss Score
8.79
5' ss Seq
AAGGTAAAA
5' ss Score
8.38
Exon sequences
Seq C1 exon
GGCATTGTGGCAACCATAAAGAAAAAGGAATACAATTTCCTAGACCAGCGGAAAATGGATTTTGACCAAGATTACGAAGAGTTTTGCAAGCAGACTAATGACCTTCAT
Seq A exon
AACGAGTTGCGGAAGTTCATGGATGTTACATTTGCAAAGATTCAAAACACAAATCAAGCTCTAAGAATGTTGAAGAAATTTGAAAG
Seq C2 exon
ATTGAATATACCTAATCTTGGTATTGATGACAAATATCAACTTATCCTTGAGAACTATGGGGCTGACATTGATATGATTTCAAAGCTGTATACAAAGCAGAAATACGATCCTCCTCTGGCTCGAAACCAGCCTCCCATCGCTGGAAAGATTTTGTGGGCCCGCCAGCTCTTCCATAGGATTCAGCAGCCCATGCAGCTTTTCCAGCAGCACCCAGCTGTGCTAAGCACGGCAGAAGCCAAACCTATAATTCGCAGTTACAACAGGATGGCCAAGGTCCTCCTGGAGTTTGAGGTCCTCTTCCACAGGGCGTGGCTTCGGCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000039139-'12-14,'12-13,14-14=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF083857=DHC_N1=FE(6.3=100)
A:
PF083857=DHC_N1=FE(5.0=100)
C2:
PF083857=DHC_N1=FE(19.1=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCAAGCAGACTAATGACCTTCA
R:
GCCCACAAAATCTTTCCAGCG
Band lengths:
183-269
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)