BtaEX6076681 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000003300 | MFGE8
Description
milk fat globule-EGF factor 8 protein [Source:HGNC Symbol;Acc:HGNC:7036]
Coordinates
chr21:20889913-20892176:-
Coord C1 exon
chr21:20891992-20892176
Coord A exon
chr21:20890804-20890959
Coord C2 exon
chr21:20889913-20890682
Length
156 bp
Sequences
Splice sites
3' ss Seq
TTTTTTTTCACCCCTTGTAGATT
3' ss Score
10.24
5' ss Seq
AAGGTGAGT
5' ss Score
10.47
Exon sequences
Seq C1 exon
GATGCACTGAACCCCTAGGCCTGAAGGATAATACCATCCCCAACAAGCAGATCACAGCCTCCAGCTACTACAAAACCTGGGGCCTGAGTGCCTTTAGCTGGTTTCCCTACTACGCACGACTGGATAATCAGGGCAAGTTCAACGCCTGGACCGCCCAGACCAACAGTGCCTCTGAGTGGCTGCAG
Seq A exon
ATTGACCTGGGCTCCCAGAAGCGAGTCACGGGCATCATCACCCAGGGTGCCCGAGACTTTGGCCACATTCAATATGTGGCTGCCTACAGGGTGGCCTATGGTGATGATGGTGTGACCTGGACTGAGTACAAGGACCCGGGGGCCTCAGAAAGCAAG
Seq C2 exon
ATTTTCCCTGGTAACATGGACAATAATTCCCACAAGAAGAACATATTTGAGACGCCGTTCCAGGCTCGCTTCGTGCGGATCCAGCCCGTGGCCTGGCACAACCGTATCACCCTGCGAGTGGAGCTGCTGGGCTGTTAGTGGTAGGCCTGGCCGAAGTGACCGGAGGGGCCCTGGGGCAGCTGCTCCTTTCTGTGGACCTGCTGCCTCCTCCGCCCGCCCTCCTGATTGTAGCTGACCTGGGGGCAGGCAGTGTCTCCCTCCCAGTCACCTCTCCCTCCCTCCTCTTCCTCGCCCCCGCCCAGGGGTCTCTGGCACCCAGTCCTCAAGCCATCCCGTTTTCTTAGGCACGGTGGGAGCTGAGTAGGTCTGGGATGGACAGGGAAGGGCAAAGTACAGAGCGTGGGTGACCTTTGCCTCTCCAGGTCCCCACGTCCAGCCCCCCGTGTCCTTCCTGCACTGCTCCCACACCCCACACCCCCAGGGCCCTGAGGAATAGACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000003300-'15-15,'15-13,17-15=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.038 C2=0.089
Domain overlap (PFAM):
C1:
PF0075420=F5_F8_type_C=PU(32.1=72.6)
A:
PF0075420=F5_F8_type_C=FE(36.4=100)
C2:
PF0075420=F5_F8_type_C=PD(29.3=89.1)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTGAACCCCTAGGCCTGAAG
R:
CCTGGAACGGCGTCTCAAATA
Band lengths:
244-400
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]