GgaEX1036028 @ galGal4
Exon Skipping
Gene
ENSGALG00000006702 | MFGE8
Description
lactadherin isoform 2 precursor [Source:RefSeq peptide;Acc:NP_001264040]
Coordinates
chr10:12530563-12532023:+
Coord C1 exon
chr10:12530563-12530747
Coord A exon
chr10:12531620-12531775
Coord C2 exon
chr10:12531884-12532023
Length
156 bp
Sequences
Splice sites
3' ss Seq
CAGCCCCATCTCTATTCCAGATC
3' ss Score
8.33
5' ss Seq
AAGGTATGG
5' ss Score
9.26
Exon sequences
Seq C1 exon
GTTGCTCGGAGCCTCTGGGCATGAAATCCCGCCTGATCTCTGACCAGCAGATCACAGCTTCCAGCGTCTTCAAGACATGGGGCATTGATGCCTTTACCTGGTATCCCCATTATGCCCGCCTGGACAAGATGGGCAAGACGAATGCATGGACAGCACTGCACAATGACCAGTCCGAGTGGCTGCAG
Seq A exon
ATCGACCTTCGGGACCAGAAGAAGGTGACAGGCATCGTTACGCAGGGAGCTCGTGACTTTGGCCACATCCAGTACGTGGCAGCCTACAAAGTGGCATACAGTGACAATGGCACCTCCTGGACTGTGTACAGGGACAGCCAGACCAACAGCACCAAG
Seq C2 exon
ATCTTCCACGGCAACAGTGACAACTACTCACACAAGAAGAACGTCTTTGATGTGCCCTTCCATGCCCGCTTTGTGCGCATCCTGCCCGTGGCCTGGCACAACCGCATCACGCTGCGTGTGGAGCTGCTGGGCTGTGACGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000006702_CASSETTE2
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0075420=F5_F8_type_C=PU(32.1=72.6)
A:
PF0075420=F5_F8_type_C=FE(36.4=100)
C2:
PF0075420=F5_F8_type_C=PD(29.3=87.2)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCATGAAATCCCGCCTGATCT
R:
CACAAAGCGGGCATGGAAGG
Band lengths:
242-398
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]