GgaEX1036028 @ galGal3
Exon Skipping
Gene
ENSGALG00000006702 | MFGE8
Description
NA
Coordinates
chr10:14725029-14726661:+
Coord C1 exon
chr10:14725029-14725213
Coord A exon
chr10:14726086-14726241
Coord C2 exon
chr10:14726350-14726661
Length
156 bp
Sequences
Splice sites
3' ss Seq
CAGCCCCATCTCTATTCCAGATC
3' ss Score
8.33
5' ss Seq
AAGGTATGG
5' ss Score
9.26
Exon sequences
Seq C1 exon
GTTGCTCGGAGCCTCTGGGCATGAAATCCCGCCTGATCTCTGACCAGCAGATCACAGCTTCCAGCGTCTTCAAGACATGGGGCATTGATGCCTTTACCTGGTATCCCCATTATGCCCGCCTGGACAAGATGGGCAAGACGAATGCATGGACAGCACTGCACAATGACCAGTCCGAGTGGCTGCAG
Seq A exon
ATCGACCTTCGGGACCAGAAGAAGGTGACAGGCATCGTTACGCAGGGAGCTCGTGACTTTGGCCACATCCAGTACGTGGCAGCCTACAAAGTGGCATACAGTGACAATGGCACCTCCTGGACTGTGTACAGGGACAGCCAGACCAACAGCACCAAG
Seq C2 exon
ATCTTCCACGGCAACAGTGACAACTACTCACACAAGAAGAACGTCTTTGATGTGCCCTTCCATGCCCGCTTTGTGCGCATCCTGCCCGTGGCCTGGCACAACCGCATCACGCTGCGTGTGGAGCTGCTGGGCTGTGACGAGTAGGGGCGCGGGGCGGCACGTGGAGGAGGGACAGCCCCGTCCCCATCACCCGGCCCACACCCTGCCCACCCCGCACACCTCCTGCTCACACCTCCCTCTTCTCCTCCCCGAATTTCGGAGGGAGGCTCCGGGCGCTGCCTCGCCTCAGGGGGTCCCCTGCCCTGCGCTGGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000006702-'10-17,'10-16,12-17=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0075420=F5_F8_type_C=PU(32.1=72.6)
A:
PF0075420=F5_F8_type_C=FE(36.4=100)
C2:
PF0075420=F5_F8_type_C=PD(29.3=85.4)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCCTTTACCTGGTATCCCCA
R:
CCCTACTCGTCACAGCCCAG
Band lengths:
243-399
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]