MmuEX6011633 @ mm10
Exon Skipping
Gene
ENSMUSG00000030605 | Mfge8
Description
milk fat globule-EGF factor 8 protein [Source:MGI Symbol;Acc:MGI:102768]
Coordinates
chr7:79133768-79136841:-
Coord C1 exon
chr7:79136657-79136841
Coord A exon
chr7:79134652-79134801
Coord C2 exon
chr7:79133768-79134546
Length
150 bp
Sequences
Splice sites
3' ss Seq
AATGTTGTTTTTTCCTGTAGGTT
3' ss Score
11.43
5' ss Seq
AAGGTGGGT
5' ss Score
8.23
Exon sequences
Seq C1 exon
GATGTTCTGAGCCCCTGGGCCTGAAGAATAACACAATTCCTGACAGCCAGATGTCAGCCTCCAGCAGCTACAAGACATGGAACCTGCGTGCTTTTGGCTGGTACCCCCACTTGGGAAGGCTGGATAATCAGGGCAAGATCAATGCCTGGACGGCTCAGAGCAACAGTGCCAAGGAATGGCTGCAG
Seq A exon
GTTGACCTGGGCACTCAGAGGCAAGTGACAGGAATCATCACCCAGGGGGCCCGTGACTTTGGCCACATCCAGTATGTGGCGTCCTACAAGGTAGCCCACAGTGATGATGGTGTGCAGTGGACTGTATATGAGGAGCAAGGAAGCAGCAAG
Seq C2 exon
GTCTTCCAGGGCAACTTGGACAACAACTCCCACAAGAAGAACATCTTCGAGAAACCCTTCATGGCTCGCTACGTGCGTGTCCTTCCAGTGTCCTGGCATAACCGCATCACCCTGCGCCTGGAGCTGCTGGGCTGTTAATGCTCAGTCCTGCCAGCCCAAACGATGAGGATGGCCAGAGGCTGAGGGGCCTCCTGGCCCTGCCTCCCAGGCCCTGCTGCCTTCTGTGGCTGACGACCTTCTTGGCCTTCCCTTCTGATTGTACTGGGGCTGGAGGCAGGAAGGGCCAGGGGATTTCAGAGTTGCCCTTCACCCTTTCCCTCACCCTGCAGCCCCCACAGGCCTCCTGCTAGCCCCCTTCTCTCAGGCATTCTGGGGGAGTTGGACAGGTCTGAGATGAATAGAGAAGAAGAGTGAAGTTGGGGTATGTGGGCTATCTGTACCAACCACCCCAAGTCCTAAACTTCCTGCCAGGGCTTGACTCAGGACTGAAGGGAGCCCCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000030605-'24-26,'24-24,29-26
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.015 A=0.000 C2=0.022
Domain overlap (PFAM):
C1:
PF0075420=F5_F8_type_C=PU(32.6=72.6)
A:
PF0075420=F5_F8_type_C=FE(35.5=100)
C2:
PF0075420=F5_F8_type_C=PD(29.7=89.1)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CATGGAACCTGCGTGCTTTTG
R:
ACTGAGCATTAACAGCCCAGC
Band lengths:
256-406
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types