MmuEX6011633 @ mm9
Exon Skipping
Gene
ENSMUSG00000030605 | Mfge8
Description
milk fat globule-EGF factor 8 protein [Source:MGI Symbol;Acc:MGI:102768]
Coordinates
chr7:86278655-86281727:-
Coord C1 exon
chr7:86281543-86281727
Coord A exon
chr7:86279538-86279687
Coord C2 exon
chr7:86278655-86279432
Length
150 bp
Sequences
Splice sites
3' ss Seq
AATGTTGTTTTTTCCTGTAGGTT
3' ss Score
11.43
5' ss Seq
AAGGTGGGT
5' ss Score
8.23
Exon sequences
Seq C1 exon
GATGTTCTGAGCCCCTGGGCCTGAAGAATAACACAATTCCTGACAGCCAGATGTCAGCCTCCAGCAGCTACAAGACATGGAACCTGCGTGCTTTTGGCTGGTACCCCCACTTGGGAAGGCTGGATAATCAGGGCAAGATCAATGCCTGGACGGCTCAGAGCAACAGTGCCAAGGAATGGCTGCAG
Seq A exon
GTTGACCTGGGCACTCAGAGGCAAGTGACAGGAATCATCACCCAGGGGGCCCGTGACTTTGGCCACATCCAGTATGTGGCGTCCTACAAGGTAGCCCACAGTGATGATGGTGTGCAGTGGACTGTATATGAGGAGCAAGGAAGCAGCAAG
Seq C2 exon
GTCTTCCAGGGCAACTTGGACAACAACTCCCACAAGAAGAACATCTTCGAGAAACCCTTCATGGCTCGCTACGTGCGTGTCCTTCCAGTGTCCTGGCATAACCGCATCACCCTGCGCCTGGAGCTGCTGGGCTGTTAATGCTCAGTCCTGCCAGCCCAAACGATGAGGATGGCCAGAGGCTGAGGGGCCTCCTGGCCCTGCCTCCCAGGCCCTGCTGCCTTCTGTGGCTGACGACCTTCTTGGCCTTCCCTTCTGATTGTACTGGGGCTGGAGGCAGGAAGGGCCAGGGGATTTCAGAGTTGCCCTTCACCCTTTCCCTCACCCTGCAGCCCCCACAGGCCTCCTGCTAGCCCCCTTCTCTCAGGCATTCTGGGGGAGTTGGACAGGTCTGAGATGAATAGAGAAGAAGAGTGAAGTTGGGGTATGTGGGCTATCTGTACCAACCACCCCAAGTCCTAAACTTCCTGCCAGGGCTTGACTCAGGACTGAAGGGAGCCCCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000030605-'10-10,'10-8,11-10=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.016 A=0.000 C2=0.022
Domain overlap (PFAM):
C1:
PF0075420=F5_F8_type_C=PU(32.6=72.6)
A:
PF0075420=F5_F8_type_C=FE(35.5=100)
C2:
PF0075420=F5_F8_type_C=PD(29.7=89.1)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CATGGAACCTGCGTGCTTTTG
R:
ACTGAGCATTAACAGCCCAGC
Band lengths:
256-406
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: