BtaEX6085736 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000008424 | ABR
Description
Bos taurus active BCR-related gene (ABR), mRNA. [Source:RefSeq mRNA;Acc:NM_001046204]
Coordinates
chr19:22422734-22424974:+
Coord C1 exon
chr19:22422734-22422843
Coord A exon
chr19:22423565-22423704
Coord C2 exon
chr19:22424840-22424974
Length
140 bp
Sequences
Splice sites
3' ss Seq
TACCCCACCCCCACCCCCAGGCG
3' ss Score
7.11
5' ss Seq
CCAGTGAGT
5' ss Score
8.28
Exon sequences
Seq C1 exon
ATCAAAGTGGAATTCTCCATGAAATTCACTAGCCGAGACATGAGCCTGAAGAGGACCCCCTCCAAAAAGCAGAGCGGCGTCTTCGGTGTGAAGATCAGCGTGGTGACCAA
Seq A exon
GCGGGAGCGCTCCAAGGTGCCCTACATCGTGCGGCAGTGTGTGGAGGAGGTGGAGAAGCGGGGCATCGAGGAAGTTGGCATCTACCGGATATCAGGGGTGGCCACAGACATCCAGGCGCTGAAGGCCGTCTTTGATGCCA
Seq C2 exon
ATAACAAGGACATCCTGCTGATGCTGAGCGACATGGACATCAATGCCATTGCCGGCACCCTCAAGCTCTACTTCCGGGAGCTGCCCGAGCCCCTCCTCACAGACCGACTGTATCCCGCCTTCATGGAGGGCATCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000008424-'50-41,'50-38,51-41=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.027 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0062022=RhoGAP=PU(26.1=83.3)
C2:
PF0062022=RhoGAP=FE(29.4=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
ATTCTCCATGAAATTCACTAGCCGA
R:
CGATGCCCTCCATGAAGGC
Band lengths:
234-374
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]