RnoEX0005586 @ rn6
Exon Skipping
Gene
ENSRNOG00000056837 | Abr
Description
ABR, RhoGEF and GTPase activating protein [Source:RGD Symbol;Acc:1306279]
Coordinates
chr10:64571470-64573403:-
Coord C1 exon
chr10:64573294-64573403
Coord A exon
chr10:64572393-64572532
Coord C2 exon
chr10:64571470-64571604
Length
140 bp
Sequences
Splice sites
3' ss Seq
TCTGCACCCATGTCCCGCAGGCG
3' ss Score
8.42
5' ss Seq
CCAGTGAGT
5' ss Score
8.28
Exon sequences
Seq C1 exon
ATCAAAGTGGAATTCTCCATGAAATTTACCAGCCGTGACATGAGCCTGAAGAGGACTCCATCCAAAAAGCAGACAGGTGTCTTCGGAGTGAAGATCAGTGTGGTGACCAA
Seq A exon
GCGGGAGCGCTCCAAGGTGCCCTACATAGTCCGGCAGTGCATAGAAGAGGTGGAGAAGAGGGGCATCGAGGAGGTTGGCATCTACAGGATATCAGGGGTGGCCACGGACATCCAGGCCCTGAAGGCTGTCTTTGATGCCA
Seq C2 exon
ATAACAAGGATATCCTACTGATGCTGAGTGACATGGACATCAACGCTATTGCTGGTACCCTCAAGCTCTACTTTCGGGAGCTGCCTGAGCCCCTCCTTACAGACCGACTCTACCCAGCCTTCATGGAGGGCATTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000056837-'48-43,'48-41,50-43
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.027 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0062022=RhoGAP=PU(26.1=83.3)
C2:
PF0062022=RhoGAP=FE(29.4=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
ATTCTCCATGAAATTTACCAGCCGT
R:
CAATGCCCTCCATGAAGGCTG
Band lengths:
234-374
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]