HsaEX6019765 @ hg19
Exon Skipping
Gene
ENSG00000159842 | ABR
Description
active BCR-related [Source:HGNC Symbol;Acc:81]
Coordinates
chr17:913969-916037:-
Coord C1 exon
chr17:915928-916037
Coord A exon
chr17:915086-915225
Coord C2 exon
chr17:913969-914103
Length
140 bp
Sequences
Splice sites
3' ss Seq
ATCCTCACGCTCCACCCCAGGCG
3' ss Score
4.9
5' ss Seq
CCAGTGAGT
5' ss Score
8.28
Exon sequences
Seq C1 exon
ATCAAAGTGGAATTTTCCATGAAATTCACCAGCCGAGATATGAGCCTGAAGAGGACCCCGTCCAAAAAGCAGACCGGCGTCTTCGGTGTGAAGATCAGCGTGGTGACGAA
Seq A exon
GCGGGAGCGCTCCAAGGTGCCCTACATCGTCCGGCAGTGTGTGGAGGAGGTGGAGAAGAGGGGTATCGAGGAGGTTGGCATCTACAGGATATCGGGCGTGGCCACGGACATCCAGGCGCTCAAGGCCGTCTTCGATGCCA
Seq C2 exon
ATAACAAGGACATCCTGCTGATGCTGAGTGACATGGACATCAACGCCATCGCCGGGACGCTCAAGCTGTACTTCCGGGAACTGCCCGAGCCGCTCCTCACGGACCGACTCTACCCAGCCTTCATGGAGGGCATCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000159842-'26-29,'26-25,29-29=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.022 A=0.000 C2=0.009
Domain overlap (PFAM):
C1:
NO
A:
PF0062022=RhoGAP=PU(26.1=83.3)
C2:
PF0062022=RhoGAP=FE(29.4=100)
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
AATTTTCCATGAAATTCACCAGCCG
R:
GATGCCCTCCATGAAGGCTG
Band lengths:
234-374
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)