GgaEX7010012 @ galGal4
Exon Skipping
Gene
ENSGALG00000004364 | ABR
Description
active BCR-related [Source:HGNC Symbol;Acc:HGNC:81]
Coordinates
chr19:6336652-6337690:+
Coord C1 exon
chr19:6336652-6336761
Coord A exon
chr19:6336870-6337009
Coord C2 exon
chr19:6337556-6337690
Length
140 bp
Sequences
Splice sites
3' ss Seq
ACCTCTGCTTTCTGAGCCAGGCG
3' ss Score
4.01
5' ss Seq
CGAGTGAGT
5' ss Score
8.49
Exon sequences
Seq C1 exon
ATCAAGGTGGAGTTCTCCATGAAGTTCACAAGCAGAGACATGAGCCTGAAGAGGACCCCGTCCAAAAAGCAGACCGGAGTCTTTGGAGTCAAAATCAGCGTCGTGACAAA
Seq A exon
GCGTGAGCGCTCCAAGGTGCCTTACATTGTGCGCCAGTGCATCGAGGAGGTGGAGAAGAGAGGCATTGAGGAGGTCGGCATCTACAGGATCTCTGGCGTCGCCACAGACATCCAGGCATTGAAGGCTGTCTTTGATGCGA
Seq C2 exon
ATAACAAGGACATCCTGGTGATGCTGAGTGACATGGACATCAACGCCATCGCCGGCACGCTCAAGCTGTATTTCCGGGAGCTGCCTGAGCCCCTCCTCACTGACAGACTGTACCCTGCCTTTATGGAGGGCATCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004364-'29-27,'29-25,30-27=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.027 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0062022=RhoGAP=PU(26.1=83.3)
C2:
PF0062022=RhoGAP=FE(29.4=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
TCAAGGTGGAGTTCTCCATGA
R:
CGATGCCCTCCATAAAGGCAG
Band lengths:
244-384
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]