MmuEX6087643 @ mm9
Exon Skipping
Gene
ENSMUSG00000017631 | Abr
Description
active BCR-related gene [Source:MGI Symbol;Acc:MGI:107771]
Coordinates
chr11:76236550-76238525:-
Coord C1 exon
chr11:76238416-76238525
Coord A exon
chr11:76237536-76237675
Coord C2 exon
chr11:76236550-76236684
Length
140 bp
Sequences
Splice sites
3' ss Seq
TCTGCACCCGTGTCCTGCAGGCG
3' ss Score
8.46
5' ss Seq
CCAGTGAGT
5' ss Score
8.28
Exon sequences
Seq C1 exon
ATCAAAGTGGAATTCTCCATGAAATTTACCAGCCGTGACATGAGCCTGAAGAGGACCCCATCCAAAAAGCAGACAGGCGTCTTTGGAGTGAAGATCAGCGTGGTGACCAA
Seq A exon
GCGGGAGCGCTCCAAGGTGCCCTACATCGTCCGGCAATGCATAGAAGAGGTGGAGAAGAGGGGCATTGAGGAGGTTGGCATCTACAGGATATCAGGGGTGGCCACGGACATCCAGGCCCTGAAGGCTGTCTTTGATGCCA
Seq C2 exon
ATAACAAGGACATCCTACTGATGCTGAGCGACATGGACATCAACGCCATCGCTGGGACCCTCAAGCTATACTTTCGGGAGCTGCCTGAGCCCCTCCTTACAGATAGACTTTATCCAGCCTTCATGGAGGGCATTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000017631-'28-36,'28-35,29-36=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.027 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0062022=RhoGAP=PU(26.1=83.3)
C2:
PF0062022=RhoGAP=FE(29.4=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
ATTCTCCATGAAATTTACCAGCCGT
R:
CAATGCCCTCCATGAAGGCTG
Band lengths:
234-374
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: