DreEX0000099 @ danRer10
Exon Skipping
Gene
ENSDARG00000095180 | ABR (2 of 2)
Description
active BCR-related [Source:HGNC Symbol;Acc:HGNC:81]
Coordinates
chr5:61948476-61953109:+
Coord C1 exon
chr5:61948476-61948585
Coord A exon
chr5:61950340-61950479
Coord C2 exon
chr5:61952975-61953109
Length
140 bp
Sequences
Splice sites
3' ss Seq
TCTTGTGTGTTGTTCCTCAGACG
3' ss Score
9.15
5' ss Seq
CCAGTAAGA
5' ss Score
5.9
Exon sequences
Seq C1 exon
ATTAAAGTAGAGTTTTCGATGAAGTTTACAAGCCGAGACTTGAGCTTGAAGCGGACGCCGTCTAAGAAACAGAGCGGCGTGTTTGGAGTCAAAATCAGCGTGGTGACAAA
Seq A exon
ACGCGAGCGCTCCAAGGTGCCTTATATTGTGCGGCAGTGCATAGAGGAGGTGGAGAAGAGAGGGATTGATGAAGTGGGCATTTACAGGATCTCTGGAGTGGCCACAGACATCCAGGCCCTCAAAGCTGCGTTTGACGCCA
Seq C2 exon
ATACCAAAGATATCCTGATGATGTTGAGTGATATGGACATTAATGCCATAGCAGGGACGCTGAAACTGTATTTCAGGGAACTGCCAGAACCTCTTCTCACGGATCGGCTGTACCCGGCCTTCATGGAGGGCATTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000095180-'3-3,'3-2,4-3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0062022=RhoGAP=PU(26.0=83.3)
C2:
PF0062022=RhoGAP=FE(29.2=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTTTTCGATGAAGTTTACAAGCCG
R:
AAATGCCCTCCATGAAGGCC
Band lengths:
235-375
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]