BtaEX6085748 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000008424 | ABR
Description
Bos taurus active BCR-related gene (ABR), mRNA. [Source:RefSeq mRNA;Acc:NM_001046204]
Coordinates
chr19:22287405-22357051:+
Coord C1 exon
chr19:22287405-22287748
Coord A exon
chr19:22331404-22331588
Coord C2 exon
chr19:22356953-22357051
Length
185 bp
Sequences
Splice sites
3' ss Seq
TTTCTTGTTCCTTGTCTCAGACT
3' ss Score
8.68
5' ss Seq
GGGGTAGGT
5' ss Score
6.59
Exon sequences
Seq C1 exon
GGCTGCGGGGCCGCAGCTCCGGGATCCGCAGCGGGGCTCGCGGCGGCCTCAGGGGCCGGAAGGGCTCCCGGGGGCGCTCACCGGCCCTCGCCCGCCCTCCCCCTCCTCCCGGGCGGCTCCGATCGCTCCTCCCTGCTACCTGTTTCCCTGCCTCCCCCTCGCCTCCACCCAGCGCTCGGCAACTTCGGCCTGCGGGGCCCGCCGCCCGCGCCCTCCCTCCTTTGTTGTGCGATGAGGGTCGGGTTTCCGATCTGACGGAGCCTTCGCCGCCGCAGCCGCGGGCATGGAGCCGCTGAGCCATCGGGGCCTGCCGCGCCTCTCCTGGATCGACACCCTCTACAGCA
Seq A exon
ACTTCAGCTACGGGGCAGACGACTACGACGCAGAGGGGAATGAGGAGCAGAAGGGGCCCCCTGAGGGCTCGGAGACCATGCCGTACATCGACGAGTCGCCCACCATGTCGCCGCAGCTCAGCGCCCGGAGCCAGGGCGGCGGGGACAGCATCTCCCCCACCCCACCCGAGGGGCTGGCACCTGGG
Seq C2 exon
GTGGAAGCAGGGAAGGGCCTGGAGATGAGGAAGCTGGTTCTCTCGGGGTTCCTGGCCAGTGAAGAGATCTATATTAACCAGCTGGAAGCTCTGTTGCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000008424-'0-2,'0-0,5-2=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.143 A=0.919 C2=0.061
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0062115=RhoGEF=PU(10.6=60.6)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCTCCCTGCTACCTGTTTCC
R:
ACCAGCTTCCTCATCTCCAGG
Band lengths:
256-441
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]