Special

DmeEX6000007 @ dm6

Exon Skipping

Gene
FBgn0025836 | RhoGAP1A
Description
The gene Rho GTPase activating protein at 1A is referred to in FlyBase by the symbol DmelRhoGAP1A (CG40494, FBgn0025836). It is a protein_coding_gene from Dmel. It has 7 annotated transcripts and 7 polypeptides (4 unique). Gene sequence location is X:127449..140340. Its molecular function is described by: Rho guanyl-nucleotide exchange factor activity; GTPase activator activity. It is involved in the biological process described with: positive regulation of GTPase activity; positive regulation of Rho protein signal transduction; Golgi organization; negative regulation of cell size. 13 alleles are reported. No phenotypic data is available. The phenotypic class of alleles includes: viable. Summary of modENCODE Temporal Expression Profile: Temporal profile ranges from a peak of moderately high expression to a trough of moderate expression. Peak expression observed at stages throughout embryogenesis, at stages throughout the larval period, at stages throughout the pupal period, in adult female stages.
Coordinates
chrX:133503-134760:+
Coord C1 exon
chrX:133503-134127
Coord A exon
chrX:134269-134564
Coord C2 exon
chrX:134634-134760
Length
296 bp
Sequences
Splice sites
3' ss Seq
CCGGTTTTTATTCCAAGCAGATC
3' ss Score
6.21
5' ss Seq
TCAGTGAGC
5' ss Score
4.04
Exon sequences
Seq C1 exon
GCATTGACAGCCTGGGCAATTCGCTGGAGCGGAACATCAAGCCGTCTGATATACTACGTCAGAAATCATCTGATAATTTGGATTCCAAGTACTCGGCAAAACGGAAAACCACACCGGAGCTTAGTAAATTTGTGAACGTAAACAATCCTGAATTAATGGAGGAGCTCGGTCGTAAGATGGTAAGCAAGGCAGACAGCCTGGAACAAACGAGGAGGAACGACTCGTCGCCTTCTGGCTGTGGTAGCCTAGGACGCACTTCCTCCACGCCTGGGCGATCGTTGACTCCTGGACGAACCGGAGTTGGTGCCTCGCCAACTGGTAGTCTAAGTAAAACCGGAAAACTGGCAATGGCGGACAGCAGCTCCACTAGCAGTCTAGAGAGGAGATCGTGCCTGCAGGCTGTCGATGCGGACATTGGAACGGAATCGCGGGAATCGGGTGCCAACCAGCGTAGTGTAGGGTCCAAGGAGTCGCTGACATCACAAGGCATATCGGAGGTG
Seq A exon
ATCAAGAGCTACGAAAGCGTGTCTTCGCTAAGTTCGGAAAGTGCAAAGGCGGTGGCTTCCCAACAGTCGGCGGCAGCGGGCGGAGCTTTAGCGGAGTGTGAACCGTACTATGATAGCGTACCGCTCGACAACGGCGACGGAGAATACGTTTTTATTAAGCCCGGCCGCACCGGATCCTCATCCAGTCGCGATGATTTGTCGACGCCTGGGAGCAGCATTTTGCCTTTGCCTAATGTAGCGGATCCCGAATCTCCAGGCAGGACCTCTAACTACGTCAACATCGATTTCTTCCTTCA
Seq C2 exon
GCAAGGAATTGAGACGCGCTCCAGTTCGCTAGACAGTGACGGGGAGTACGAGGGTCCGCCCATATTACGCACCATTTCGCACGACGATCAAACCACAACACAAACTACTCCGGGAGCAATTCGCAAG
VastDB Features
Vast-tools module Information
Secondary ID
FBgn0025836-'17-10,'17-9,18-10=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact

ORF disruption upon sequence exclusion

No structure available
Features
Disorder rate (Iupred):
  C1=0.981 A=0.598 C2=0.741
Domain overlap (PFAM):

C1:
NO
A:
NO
C2:
NO


Main Inclusion Isoform:
FBpp0111832


Main Skipping Isoform:
NA


Other Inclusion Isoforms:
FBpp0111833, FBpp0291410, FBpp0309060, FBpp0309061, FBpp0309062


Other Skipping Isoforms:
NA
Associated events
Primers PCR
Suggestions for RT-PCR validation
F:
TAGCCTAGGACGCACTTCCTC
R:
CACTGTCTAGCGAACTGGAGC
Band lengths:
297-593
Functional annotations
There are 0 annotated functions for this event


GENOMIC CONTEXT[edit]

INCLUSION PATTERN[edit]


SPECIAL DATASETS

  • Neural diversity
  • Neurogenesis
  • Neuronal activity
  • Splicing factor regulation (brain)
  • Splicing factor regulation (SL2)