BtaEX6074107 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000020566 | BCR
Description
breakpoint cluster region [Source:HGNC Symbol;Acc:HGNC:1014]
Coordinates
chr17:73731426-73777840:-
Coord C1 exon
chr17:73777816-73777840
Coord A exon
chr17:73739310-73739476
Coord C2 exon
chr17:73731426-73731530
Length
167 bp
Sequences
Splice sites
3' ss Seq
CTGCTTCTCTGCACTTGCAGATG
3' ss Score
10.86
5' ss Seq
GCGGTGAGT
5' ss Score
10.49
Exon sequences
Seq C1 exon
GATGGCGCCTTACACGCAGACGCAG
Seq A exon
ATGCGTTGTTCGGGACGCCACCGGGGTTCGGCTGTGCCTCGGATCGGGCGGAGGAGCCGCGCCGGCCCCAGGACGGGCTGCCCTACATCGATGACTCGCCCGCCTCCTCACCCCACCTCAGCAGCAAGGCCCGGGGTGGCAGGGACGCGGCGGAGCCCAGCAGAGCG
Seq C2 exon
AGTGAGCTGGACTTGGAAAAGGGCTCAGAGATGAGAAAATGGGTCCTGTCTGGCATCCTGGCTAGCGAGGAGACTTACCTGAGCCATCTGGAGGCGCTGCTGCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000020566-'1-7,'1-5,6-7=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=0.114
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0062115=RhoGEF=PU(10.6=57.1)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
CGCCTTACACGCAGACGC
R:
CAGCAGCGCCTCCAGATG
Band lengths:
122-289
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]