RnoEX0014487 @ rn6
Exon Skipping
Gene
ENSRNOG00000001304 | Bcr
Description
BCR, RhoGEF and GTPase activating protein [Source:RGD Symbol;Acc:1307993]
Coordinates
chr20:14474939-14545772:-
Coord C1 exon
chr20:14544919-14545772
Coord A exon
chr20:14480821-14480993
Coord C2 exon
chr20:14474939-14475043
Length
173 bp
Sequences
Splice sites
3' ss Seq
TCGCCCCTCTGTACACACAGATT
3' ss Score
6.86
5' ss Seq
GCGGTGAGT
5' ss Score
10.49
Exon sequences
Seq C1 exon
CAATGCCAATGGCGGCAACAGGCCCCCTTGGCCGCCCCTGGAGTATCAACCCTACCAGAGCATCTACGTCGGGGGTATGATGGTGGAAGGGGAGGGCAAGAGCCCTCTCCTGCGAAGCCAGAGCACTTCAGAGCAGGAGAAGCGCCTCACCTGGCCCCGCAGGTCCTACTCGCCTCGGAGTTTTGAGGACAGCGGAGGTGGCTACACTCCGGACTGCAGCTCCAATGAGAACCTCACCTCCAGTGAGGAGGACTTTTCCTCTGGCCAGTCCAGCCGCGTGTCACCAAGCCCCACCACCTACCGTATGTTCCGGGACAAGAGTCGCTCACCCTCGCAGAATTCACAACAGTCCTTTGACAGCAGCAGCCCTCCGACGCCACAGTGCCAGAAGCGGCACCGGCAGTGCCAGGTTGTGGTGTCTGAGGCTACCATAGTAGGTGTTCGCAAGACCGGGCAGATCTGGCCCAGTGATGGGGACAGCACCTTTCAGGGGGAAGCAG
Seq A exon
ATTCCTCGTTTGGAACACCACCTGGATATGGCTGTGCTGCAGACCAGGCTGAGGAACAGCGCCGGCACCAGGACGGGCTGCCCTACATCGATGATTCACCTTCCTCCTCGCCACACCTCAGCAGCAAAGGCAGGGGCAGCCCAGCCTCAGGCGCCCTGGAGCCCACCAAAGCG
Seq C2 exon
AGTGAGCTGGATTTGGAAAAGGGCTTGGAGATGAGGAAGTGGGTTTTGTCCGGAATCCTGGCCAGCGAGGAGACATACCTGAGCCATCTGGAGGCCCTGCTGCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000001304-'0-2,'0-1,2-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.937 A=1.000 C2=0.086
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0062115=RhoGEF=PU(10.6=57.1)
Main Skipping Isoform:
ENSRNOT00000001766fB1964
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
ACAGTCCTTTGACAGCAGCAG
R:
GCCTCCAGATGGCTCAGGTAT
Band lengths:
250-423
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]