MmuEX0007888 @ mm9
Exon Skipping
Gene
ENSMUSG00000009681 | Bcr
Description
breakpoint cluster region [Source:MGI Symbol;Acc:MGI:88141]
Coordinates
chr10:74523641-74593870:+
Coord C1 exon
chr10:74523641-74525055
Coord A exon
chr10:74587769-74587941
Coord C2 exon
chr10:74593766-74593870
Length
173 bp
Sequences
Splice sites
3' ss Seq
TCATTCCTTTGTACACACAGATT
3' ss Score
7.04
5' ss Seq
GTGGTGAGT
5' ss Score
8.95
Exon sequences
Seq C1 exon
AAATGCCAACGGCGGCAACAGGCCCCCTTGGCCGCCCCTGGAGTACCAACCCTACCAGAGCATCTATGTCGGAGGCATGATGGTGGAAGGGGAGGGCAAGAGCCCTCTCCTGCGAAGCCAGAGCACTTCAGAGCAGGAGAAACGCCTAACCTGGCCTCGCAGGTCCTACTCGCCTCGGAGTTTCGAGGACAGCGGAGGTGGCTACACGCCGGACTGCAGCTCCAACGAGAACCTCACCTCCAGCGAGGAGGACTTTTCCTCTGGCCAGTCCAGCCGCGTGTCACCAAGCCCCACCACCTACCGCATGTTCCGGGACAAGAGCCGCTCACCCTCGCAGAATTCGCAGCAGTCCTTTGACAGCAGCAGCCCCCCGACGCCACAGTGCCAGAAGCGGCACCGGCAGTGCCAGGTTGTGGTGTCTGAGGCTACCATCGTGGGTGTCCGCAAGACTGGGCAGATCTGGCCCAGTGATGGGGACAGCACCTTTCAAGGGGAAGCAG
Seq A exon
ATTCCTCGTTTGGAACACCACCTGGATATGGCTGTGCCGCAGACCAGGCTGAGGAACAGCGCCGGCACCAGGACGGGCTGCCCTACATCGATGATTCACCTTCTTCCTCGCCACACCTCAGCAGCAAAGGCAGAGGCAGCCTGGCCTCAGGCGCCCTGGATCCCACCAAAGTG
Seq C2 exon
AGTGAGCTGGATCTGGAAAAGGGCCTGGAGATGAGAAAGTGGGTTTTGTCCGGAATCCTGGCCAGCGAGGAGACGTACCTGAGCCATCTGGAGGCCCTGCTGCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000009681-'1-2,'1-1,2-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.899 A=0.897 C2=0.000
Domain overlap (PFAM):
C1:
PF090365=Bcr-Abl_Oligo=WD(100=18.4)
A:
NO
C2:
PF0062115=RhoGEF=PU(10.6=57.1)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
TTCGCAGCAGTCCTTTGACAG
R:
ATGGCTCAGGTACGTCTCCTC
Band lengths:
248-421
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: